AutismKB 2.0

Annotation Detail for RBM5


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Basic Information Top
Gene Symbol:RBM5 ( FLJ39876,G15,LUCA15,RMB5 )
Gene Full Name: RNA binding motif protein 5
Band: 3p21.31
Quick LinksEntrez ID:10181; OMIM: 606884; Uniprot ID:RBM5_HUMAN; ENSEMBL ID: ENSG00000003756; HGNC ID: 9902
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
59Phosphoserine.
69Phosphoserine (By similarity).
78Phosphoserine (By similarity).
542N6-acetyllysine.
621Phosphoserine.
624Phosphoserine.
712Phosphotyrosine.
Location(AA) Modifications Resource
59Phosphoserine.Swiss-Prot 53.0
59PhosphoserinePhospho.ELM 6.0
69Phosphoserine (By similarity).Swiss-Prot 53.0
69PhosphoserinePhospho.ELM 6.0
78PhosphoserinePhospho.ELM 6.0
621Phosphoserine (By similarity).Swiss-Prot 53.0
621PhosphoserinePhospho.ELM 6.0
624Phosphoserine.Swiss-Prot 53.0
624PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
10Phosphothreonine(PKC)HMM predict
54SulfotyrosineHMM predict
54Phosphotyrosine(Syk)HMM predict
57Phosphotyrosine(INSR)HMM predict
57Phosphotyrosine(Syk)HMM predict
69Phosphoserine(CK2)HMM predict
69Phosphoserine(PKB)HMM predict
69Phosphoserine(PKA)HMM predict
69Phosphoserine(PKG)HMM predict
76Phosphotyrosine(Syk)HMM predict
82Phosphotyrosine(INSR)HMM predict
87SulfotyrosineHMM predict
136Phosphothreonine(PKA)HMM predict
191S-palmitoylHMM predict
211PhosphoserineHMM predict
332O-linkedHMM predict
344Phosphoserine(IKK)HMM predict
348Phosphoserine(ATM)HMM predict
348Phosphoserine(IKK)HMM predict
368Phosphotyrosine(Syk)HMM predict
378Phosphotyrosine(Syk)HMM predict
378SulfotyrosineHMM predict
378Phosphotyrosine(EGFR)HMM predict
382Phosphotyrosine(Syk)HMM predict
395Phosphoserine(IKK)HMM predict
395Phosphoserine(CK1)HMM predict
397O-linkedHMM predict
399O-linkedHMM predict
402O-linkedHMM predict
403O-linkedHMM predict
404O-linkedHMM predict
405O-linkedHMM predict
405O-linkedHMM predict
416Phosphotyrosine(Abl)HMM predict
417N-linkedHMM predict
421N-linkedHMM predict
425O-linkedHMM predict
425Phosphoserine(CDC2)HMM predict
433Phosphoserine(IKK)HMM predict
433O-linkedHMM predict
433O-linkedHMM predict
434O-linkedHMM predict
435O-linkedHMM predict
435Phosphoserine(CK1)HMM predict
435O-linkedHMM predict
436O-linkedHMM predict
437O-linkedHMM predict
438O-linkedHMM predict
444Phosphoserine(CDC2)HMM predict
444O-linkedHMM predict
446O-linkedHMM predict
454Phosphotyrosine(Abl)HMM predict
471SulfotyrosineHMM predict
471Phosphotyrosine(Syk)HMM predict
487SulfotyrosineHMM predict
487Phosphotyrosine(Jak)HMM predict
505Phosphotyrosine(Jak)HMM predict
505Phosphotyrosine(INSR)HMM predict
505Phosphotyrosine(SRC)HMM predict
512Phosphoserine(CK1)HMM predict
534Phosphoserine(IKK)HMM predict
576Phosphoserine(CK2)HMM predict
576Phosphoserine(PKG)HMM predict
624Phosphoserine(CK2)HMM predict
636Phosphoserine(CK1)HMM predict
652S-palmitoylHMM predict
811PhenylalanineHMM predict
812PhenylalanineHMM predict
814PhenylalanineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_005778
  • Location:chr3 50101371-50131393
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 50101026 50101561 535 78
RARA MCF7GSE15244 50101026 50101283 257 217
RARG MCF7GSE15244 50101026 50101283 257 217
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 50133994 50134273 279 2740
CTCF CD4SISSRdata 50133994 50134273 279 2740
CTCF G2GSE9613 50133091 50133408 317 1856
CTCF G2GSE9613 50133797 50134284 487 2647
CTCF G2GSE9613 50134731 50135188 457 3566
CTCF G2GSE9613 50138927 50139485 558 7813
CTCF G2GSE9613 50145142 50145455 313 13905
CTCF G2GSE9613 50146007 50147242 1235 15231
CTCF G2GSE9613 50147644 50148285 641 16571
Oct1 HelaGSE14283 50132698 50132729 31 1320
TFAP2C MCF7GSE21234 50133718 50134404 686 2668
TFAP2C MCF7GSE21234 50135212 50136658 1446 4542
TFAP2C MCF7GSE21234 50136773 50137685 912 5836
TFAP2C MCF7GSE21234 50138018 50138525 507 6878
TFAP2C MCF7GSE21234 50138605 50139336 731 7577
hScc1 BcellGSE12603 50133833 50134284 451 2665
hScc1 BcellGSE12603 50136455 50136774 319 5221
hScc1 BcellGSE12603 50137318 50137567 249 6049
hScc1 BcellGSE12603 50143136 50143377 241 11863
hScc1 CdLSGSE12603 50133725 50134731 1006 2835
hScc1 G2GSE9613 50133797 50135226 1429 3118
p130 QuiescentGSE19898 50139028 50139255 227 7748
p130 shRbQuiescentGSE19898 50139519 50140006 487 8369
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 50124882 50125120 238 0
ETS1 JurkatGSE17954 50100884 50102131 1247 0
H3K4me3 colorectalcancer 50102129 50102964 835 0
H3ac HepG2E 50101026 50101784 758 0
H3ac HepG2E 50102129 50103145 1016 0
NFkBII GM10847GSE19485 50100708 50102304 1596 0
P300 T30-glioblastomaGSE21026 50100838 50102373 1535 0
PHF8 293TGSE20725 50101052 50102094 1042 0
PHF8 HeLaGSE20725 50101042 50102163 1121 0
PHF8 Hs68minusFBSGSE20725 50101113 50102100 987 0
TAFII hESGSE17917 50101241 50101545 304 0
p130 QuiescentGSE19898 50101132 50101943 811 0
p130 SenescentGSE19898 50101156 50101914 758 0
p130 shRbQuiescentGSE19898 50101221 50102333 1112 0
p130 shRbSenescentGSE19898 50101204 50101857 653 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
18105 mRNA RBM5 chr3 50101371 50131394 228 mRNA chr3 50128458 50168522Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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