AutismKB 2.0

Annotation Detail for STAG1


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Basic Information Top
Gene Symbol:STAG1 ( DKFZp781D1416,SA1 )
Gene Full Name: stromal antigen 1
Band: 3q22.3
Quick LinksEntrez ID:10274; OMIM: 604358; Uniprot ID:STAG1_HUMAN; ENSEMBL ID: ENSG00000118007; HGNC ID: 11354
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
24Phosphoserine.
621N6-acetyllysine.
1062Phosphoserine.
1065Phosphoserine.
1067Phosphoserine.
1069Phosphoserine (By similarity).
1070Phosphoserine (By similarity).
Location(AA) Modifications Resource
1069Phosphoserine (By similarity).Swiss-Prot 53.0
1070Phosphoserine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
14N-linkedHMM predict
16O-linkedHMM predict
24Phosphoserine(CK1)HMM predict
24Phosphoserine(CK2)HMM predict
53Phosphoserine(CDC2)HMM predict
69MethylarginineHMM predict
152Phosphothreonine(PKA)HMM predict
162SulfotyrosineHMM predict
213Phosphoserine(ATM)HMM predict
328N-linkedHMM predict
387Phosphotyrosine(Jak)HMM predict
417Phosphotyrosine(SRC)HMM predict
459Phosphoserine(CDK)HMM predict
459Phosphoserine(CDC2)HMM predict
483Phosphotyrosine(Jak)HMM predict
518Phosphoserine(CK1)HMM predict
547Phosphothreonine(PKC)HMM predict
553Phosphothreonine(PKC)HMM predict
670N-linkedHMM predict
689Phosphotyrosine(Syk)HMM predict
689Phosphotyrosine(Jak)HMM predict
694Phosphothreonine(PKC)HMM predict
756PhosphoserineHMM predict
845N-linkedHMM predict
897Phosphotyrosine(Syk)HMM predict
900SulfotyrosineHMM predict
909Phosphoserine(CK1)HMM predict
996Phosphotyrosine(INSR)HMM predict
996Phosphotyrosine(EGFR)HMM predict
1062Phosphoserine(CK1)HMM predict
1067Phosphoserine(CK2)HMM predict
1068Phosphoserine(CDC2)HMM predict
1070Phosphoserine(IKK)HMM predict
1073Phosphoserine(CDC2)HMM predict
1100N-linkedHMM predict
1108Phosphothreonine(MAPK)HMM predict
1118O-linkedHMM predict
1138Phosphoserine(CK2)HMM predict
1175Phosphotyrosine(Jak)HMM predict
1207Phosphoserine(ATM)HMM predict
1207Phosphoserine(IKK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_005862
  • Location:chr3 137538688-137953934
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 137953820 137954206 386 79
CTCF CD4SISSRdata 137953820 137954206 386 79
H3K4me2 HCT116GSE10453 137954647 137955552 905 1165
H3ac HepG2E 137954463 137955552 1089 1073
PHF8 Hs68plusFBSGSE20725 137952814 137955082 2268 14
Rb QuiescentGSE19898 137953635 137954441 806 104
Rb SenescentGSE19898 137953693 137954742 1049 283
Rb shRbQuiescentGSE19898 137953699 137954316 617 73
Rb shRbSenescenceGSE19898 137953727 137954226 499 42
Rb shRbSenescenceGSE19898 137954230 137954552 322 457
TAF k562GSE8489 137954463 137955552 1089 1073
TAF k562GSE8489 137955902 137956253 351 2143
hScc1 BcellGSE12603 137960020 137960216 196 6184
hScc1 CdLSGSE12603 137953193 137955228 2035 276
hScc1 CdLSGSE12603 137959905 137960216 311 6126
hScc1 G2GSE9613 137952763 137955300 2537 97
p130 QuiescentGSE19898 137954188 137954798 610 559
p130 QuiescentGSE19898 137954822 137954940 118 947
p130 SenescentGSE19898 137953764 137954590 826 243
p130 shRbQuiescentGSE19898 137954225 137954774 549 565
p130 shRbSenescentGSE19898 137953678 137955061 1383 435
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 137675160 137675888 728 0
CTCF CD4GSE12889 137593245 137593465 220 0
CTCF CD4GSE12889 137935988 137936243 255 0
CTCF CD4SISSRdata 137593245 137593465 220 0
CTCF CD4SISSRdata 137935988 137936243 255 0
CTCF G2GSE9613 137593210 137593499 289 0
CTCF G2GSE9613 137810456 137810684 228 0
CTCF G2GSE9613 137953015 137954753 1738 0
ER E2-MCF7GSE14664 137736996 137737030 34 0
ER E2-MCF7GSE14664 137801924 137801993 69 0
ER Fulvestrant-MCF7GSE14664 137667460 137667494 34 0
FOXA1 MCF7GSE15244 137544965 137545823 858 0
FOXA1 MCF7GSE15244 137788142 137788434 292 0
FOXA1 MCF7GSE15244 137921733 137922014 281 0
Fos K562GSE19551 137868697 137869019 322 0
FoxA1 MCF7MACSdata 137545476 137545622 146 0
FoxA1 MCF7MACSdata 137862866 137863056 190 0
H3K4me3 colorectalcancer 137951925 137952868 943 0
H3ac HepG2E 137852343 137852590 247 0
H3ac HepG2E 137951647 137953076 1429 0
Myc K562GSE19551 137545387 137545656 269 0
Myc K562GSE19551 137779375 137779713 338 0
Oct1 H2O2-HelaGSE14283 137544276 137544306 30 0
Oct1 H2O2-HelaGSE14283 137799362 137799396 34 0
Oct1 H2O2-HelaGSE14283 137812617 137812654 37 0
Oct1 H2O2-HelaGSE14283 137820023 137820051 28 0
Oct1 H2O2-HelaGSE14283 137852039 137852067 28 0
Oct1 H2O2-HelaGSE14283 137935167 137935205 38 0
Oct1 HelaGSE14283 137641647 137641678 31 0
Oct1 HelaGSE14283 137667462 137667492 30 0
Oct1 HelaGSE14283 137688693 137688721 28 0
Oct1 HelaGSE14283 137735223 137735255 32 0
Oct1 HelaGSE14283 137743608 137743687 79 0
Oct1 HelaGSE14283 137757559 137757596 37 0
Oct1 HelaGSE14283 137799362 137799397 35 0
Oct1 HelaGSE14283 137806964 137807024 60 0
Oct1 HelaGSE14283 137808972 137809003 31 0
Oct1 HelaGSE14283 137839337 137839367 30 0
Oct1 HelaGSE14283 137839824 137839859 35 0
Oct1 HelaGSE14283 137935168 137935207 39 0
P300 T30-glioblastomaGSE21026 137674952 137675928 976 0
PAX3-FKHR Rh4GSE19063 137760737 137765212 4475 0
PHF8 293TGSE20725 137952835 137954937 2102 0
RARA MCF7GSE15244 137544829 137546083 1254 0
RARA MCF7GSE15244 137887832 137888116 284 0
RARA MCF7GSE15244 137921733 137922014 281 0
RARG MCF7GSE15244 137545040 137546083 1043 0
RARG MCF7GSE15244 137921733 137922014 281 0
RNAII Tamoxifen-MCF7GSE14664 137926027 137926062 35 0
Rb GrowingGSE19898 137552535 137552781 246 0
STAT1 IFNSISSRdata 137593243 137593682 439 0
STAT1 IFNSISSRdata 137806323 137807040 717 0
Sox2 hESGSE18292 137593285 137593531 246 0
TAF HelaGSE8489 137951484 137952926 1442 0
TAF k562GSE8489 137951484 137953015 1531 0
USF1 HepG2E 137952763 137953038 275 0
hScc1 BcellGSE12603 137953015 137954719 1704 0
hScc1 CdLSGSE12603 137593210 137593420 210 0
hScc1 G2GSE9613 137593210 137593456 246 0
p130 QuiescentGSE19898 137953751 137954055 304 0
p130 shRbQuiescentGSE19898 137953625 137954220 595 0
p63 keratinocytesGSE17611 137858950 137859675 725 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
18723 mRNA PCCB chr3 137451897 137539435 739 mRNA STAG1 chr3 137538696 137953943Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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