Annotation Detail for CDKN2C

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Basic Information Top

Gene Symbol:	CDKN2C ( INK4C,p18,p18-INK4C )
Gene Full Name:	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)
Band:	1p32.3
Quick Links	Entrez ID:1031; OMIM: 603369; Uniprot ID:CDN2C_HUMAN; ENSEMBL ID: ENSG00000123080; HGNC ID: 1789
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:1 results

No data

Location(AA)	Modification	Resource
156	Methionine	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_001262
Location:chr1 51206954-51212892
strand:+

Upstream the gene:5 results
Downstream the gene:0 results
Inside the gene:3 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Rb	shRbSenescence	GSE19898	51206625	51206968	343	158
TAF	Hela	GSE8489	51205579	51206274	695	1028
hScc1	Bcell	GSE12603	51206309	51206787	478	407
hScc1	CdLS	GSE12603	51206236	51207033	797	320
p130	Quiescent	GSE19898	51206455	51206894	439	280

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	51206351	51207965	1614	0
hScc1	Bcell	GSE12603	51207428	51207965	537	0
p130	shRbSenescent	GSE19898	51206499	51207766	1267	0

Validated miRNA targets

miR Walk:4 results
Tarbase V5.0:0 results

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-17	hsa-mir-17	13	19196975
hsa-miR-17*	hsa-mir-17	13	19196975
hsa-miR-19a	hsa-mir-19a	13	19196975
hsa-miR-19a*	hsa-mir-19a	13	19196975

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
775	mRNA	CDKN2C	chr1	51138437	51152326	401	EST		chr1	51145575	51146029	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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