AutismKB 2.0

Annotation Detail for LAMC3


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Basic Information Top
Gene Symbol:LAMC3 ( DKFZp434E202 )
Gene Full Name: laminin, gamma 3
Band: 9q34.12
Quick LinksEntrez ID:10319; OMIM: 604349; Uniprot ID:LAMC3_HUMAN; ENSEMBL ID: ENSG00000050555; HGNC ID: 6494
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
87N-linked (GlcNAc...) (Potential).
119N-linked (GlcNAc...) (Potential).
295N-linked (GlcNAc...) (Potential).
328N-linked (GlcNAc...) (Potential).
631N-linked (GlcNAc...) (Potential).
837N-linked (GlcNAc...) (Potential).
980N-linked (GlcNAc...) (Potential).
1061Cell attachment site (Potential).
1185N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
87N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
119N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
295N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
328N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
631N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
837N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
980N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1185N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1518N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
96Phosphoserine(ATM)HMM predict
96Phosphoserine(CK2)HMM predict
96Phosphoserine(IKK)HMM predict
119N-linkedHMM predict
259Phosphotyrosine(Syk)HMM predict
295N-linkedHMM predict
328N-linkedHMM predict
390Phosphoserine(CK1)HMM predict
415S-palmitoylHMM predict
427S-palmitoylHMM predict
430S-palmitoylHMM predict
522Phosphoserine(ATM)HMM predict
569Phosphoserine(CDC2)HMM predict
589Phosphoserine(CK1)HMM predict
592Phosphoserine(CK1)HMM predict
592Phosphoserine(ATM)HMM predict
631N-linkedHMM predict
640Phosphoserine(CDC2)HMM predict
640Phosphoserine(CDK)HMM predict
644Phosphoserine(CDK)HMM predict
644Phosphoserine(CDC2)HMM predict
644O-linkedHMM predict
657Phosphothreonine(PKC)HMM predict
664Phosphoserine(ATM)HMM predict
707S-palmitoylHMM predict
837N-linkedHMM predict
962S-palmitoylHMM predict
965S-palmitoylHMM predict
980N-linkedHMM predict
1045Phosphoserine(IKK)HMM predict
1124Phosphoserine(CK2)HMM predict
1125Phosphoserine(CK2)HMM predict
1125Phosphoserine(CK1)HMM predict
1147Phosphoserine(ATM)HMM predict
1203Phosphothreonine(PKC)HMM predict
1211Phosphotyrosine(Syk)HMM predict
1211Phosphotyrosine(Jak)HMM predict
1255Phosphoserine(MAPK)HMM predict
1300Phosphothreonine(PKC)HMM predict
1312Phosphoserine(PKG)HMM predict
1334O-linkedHMM predict
1335O-linkedHMM predict
1404O-linkedHMM predict
1439Phosphoserine(PKG)HMM predict
1439Phosphoserine(PKC)HMM predict
1439Phosphoserine(PKA)HMM predict
1443Phosphoserine(CAMK2)HMM predict
1443Phosphoserine(CK1)HMM predict
1443Phosphoserine(IKK)HMM predict
1489Phosphoserine(PKG)HMM predict
1489Phosphoserine(CK1)HMM predict
1518N-linkedHMM predict
1533Phosphoserine(CDC2)HMM predict
1542Phosphoserine(PKA)HMM predict
1542Phosphoserine(PKG)HMM predict
1542Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_006059
  • Location:chr9 132874324-132958266
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF HelaGSE12889 132863497 132863870 373 10641
TFAP2C MCF7GSE21234 132859301 132860825 1524 14262
hScc1 BcellGSE12603 132858777 132859433 656 15220
hScc1 G2GSE9613 132863462 132864516 1054 10336
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K27me3 colorectalcancer 132959329 132959727 398 1262
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 132883980 132884120 140 0
CTCF CD4GSE12889 132911880 132912297 417 0
CTCF CD4GSE12889 132923113 132923318 205 0
CTCF CD4SISSRdata 132883980 132884120 140 0
CTCF CD4SISSRdata 132911880 132912297 417 0
CTCF CD4SISSRdata 132923113 132923318 205 0
CTCF HelaGSE12889 132923127 132923383 256 0
CTCF JurkatGSE12889 132883941 132884115 174 0
CTCF JurkatGSE12889 132912016 132912206 190 0
CTCF JurkatGSE12889 132923047 132923309 262 0
ER Breast-CancerGSE22609 132906687 132907486 799 0
ER MCF7GSE19013 132957582 132958141 559 0
Fos K562GSE19551 132941490 132942541 1051 0
GABP k562GSE8489 132930294 132930613 319 0
H3K27me3 colorectalcancer 132875582 132875839 257 0
Myc K562GSE19551 132922663 132923434 771 0
TAF k562GSE8489 132930294 132930649 355 0
TFAP2C MCF7GSE21234 132945612 132946358 746 0
TFAP2C MCF7GSE21234 132957152 132958307 1155 0
hScc1 BcellGSE12603 132874307 132874812 505 0
hScc1 BcellGSE12603 132911872 132912311 439 0
hScc1 BcellGSE12603 132926390 132926878 488 0
hScc1 BcellGSE12603 132934810 132935126 316 0
hScc1 BcellGSE12603 132937695 132938021 326 0
hScc1 BcellGSE12603 132956778 132957093 315 0
hScc1 CdLSGSE12603 132911872 132912311 439 0
hScc1 G2GSE9613 132911872 132912311 439 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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