Annotation Detail for HMG20B
Basic Information Top
| Gene Symbol: | HMG20B ( BRAF25,BRAF35,FLJ26127,HMGX2,HMGXB2,PP7706,SMARCE1r,SOXL,pp8857 ) |
|---|---|
| Gene Full Name: | high-mobility group 20B |
| Band: | 19p13.3 |
| Quick Links | Entrez ID:10362; OMIM: 605535; Uniprot ID:HM20B_HUMAN; ENSEMBL ID: ENSG00000064961; HGNC ID: 5002 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 45 | Phosphoserine | HMM predict |
| 77 | Phosphotyrosine(Jak) | HMM predict |
| 119 | Phosphotyrosine(Syk) | HMM predict |
| 130 | Phosphotyrosine(Syk) | HMM predict |
| 130 | Phosphotyrosine(INSR) | HMM predict |
| 137 | Phosphotyrosine(EGFR) | HMM predict |
| 160 | Phosphoserine(CK1) | HMM predict |
| 224 | Phosphothreonine(PKA) | HMM predict |
| 226 | Phosphoserine(CAMK2) | HMM predict |
| 245 | Phosphothreonine(PKA) | HMM predict |
| 265 | O-linked | HMM predict |
- RefSeq ID: NM_006339
- Location:chr19 3523942-3530078
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CBP | T30-glioblastoma | GSE21026 | 3515922 | 3516838 | 916 | 7563 |
| Fos | K562 | GSE19551 | 3523400 | 3523989 | 589 | 248 |
| Gata1 | K562 | GSE18868 | 3523436 | 3523964 | 528 | 243 |
| Gata2 | K562 | GSE18868 | 3523530 | 3523998 | 468 | 179 |
| P300 | T30-glioblastoma | GSE21026 | 3515905 | 3516726 | 821 | 7627 |
| PolII | HeLa | GSE12783 | 3519304 | 3522946 | 3642 | 2818 |
| Rb | Growing | GSE19898 | 3523577 | 3523726 | 149 | 291 |
| Stat6 | IL-4-hr1 | GSE17850 | 3523023 | 3523576 | 553 | 643 |
| p130 | Quiescent | GSE19898 | 3523118 | 3523538 | 420 | 615 |
| p130 | Senescent | GSE19898 | 3523338 | 3523880 | 542 | 334 |
| p130 | shRbSenescent | GSE19898 | 3523394 | 3523605 | 211 | 443 |
| p130 | shRbSenescent | GSE19898 | 3523675 | 3524044 | 369 | 83 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Fos | K562 | GSE19551 | 3530959 | 3531978 | 1019 | 1390 |
| P300 | T30-glioblastoma | GSE21026 | 3531023 | 3531778 | 755 | 1322 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | Jurkat | GSE12889 | 3526362 | 3526605 | 243 | 0 |
| CTCF | G2 | GSE9613 | 3526397 | 3526636 | 239 | 0 |
| CTCF | G2 | GSE9613 | 3528434 | 3529052 | 618 | 0 |
| HIF1 | Hypo | HepG2 | 3528334 | 3528976 | 642 | 0 |
| KLF4 | hES | GSE17917 | 3528046 | 3528302 | 256 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 3528343 | 3528375 | 32 | 0 |
| Oct1 | Hela | GSE14283 | 3528343 | 3528395 | 52 | 0 |
| hScc1 | Bcell | GSE12603 | 3523955 | 3524572 | 617 | 0 |
| hScc1 | Bcell | GSE12603 | 3528054 | 3529052 | 998 | 0 |
Validated miRNA targets