AutismKB 2.0

Annotation Detail for CDX2


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Basic Information Top
Gene Symbol:CDX2 ( CDX-3,CDX3 )
Gene Full Name: caudal type homeobox 2
Band: 13q12.2
Quick LinksEntrez ID:1045; OMIM: 600297; Uniprot ID:CDX2_HUMAN; ENSEMBL ID: ENSG00000165556; HGNC ID: 1806
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
60Phosphoserine (By similarity).
Location(AA) Modifications Resource
60Phosphoserine (By similarity).Swiss-Prot 53.0
60Phosphoserine (MAP2K
Location(AA) Modification Resource
17Phosphoserine(ATM)HMM predict
60PhosphoserineHMM predict
60Phosphoserine(CDC2)HMM predict
60Phosphoserine(CDK)HMM predict
134Phosphoserine(IKK)HMM predict
150O-linkedHMM predict
176Phosphoserine(IKK)HMM predict
212Phosphothreonine(PKC)HMM predict
283Phosphoserine(MAPK)HMM predict
283Phosphoserine(CDC2)HMM predict
283Phosphoserine(IKK)HMM predict
291Phosphoserine(IKK)HMM predict
291Phosphoserine(CAMK2)HMM predict
295Phosphoserine(IKK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001265
  • Location:chr13 27434278-27441316
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 27456341 27456788 447 15248
CTCF CD4SISSRdata 27456341 27456788 447 15248
CTCF G2GSE9613 27442577 27442725 148 1335
CTCF G2GSE9613 27444477 27444807 330 3326
CTCF G2GSE9613 27447918 27448193 275 6739
CTCF G2GSE9613 27449638 27449793 155 8399
CTCF G2GSE9613 27450135 27450393 258 8948
CTCF G2GSE9613 27452160 27452750 590 11139
CTCF G2GSE9613 27456398 27456762 364 15264
CTCF G2GSE9613 27458118 27458534 416 17010
Fos K562GSE19551 27456454 27456652 198 15237
Myc hESGSE17917 27447492 27447885 393 6372
hScc1 BcellGSE12603 27450038 27450726 688 9066
hScc1 BcellGSE12603 27452405 27452677 272 11225
hScc1 BcellGSE12603 27456364 27456799 435 15265
hScc1 CdLSGSE12603 27456101 27456799 698 15134
hScc1 G2GSE9613 27456364 27456799 435 15265
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 27425992 27426266 274 8150
CTCF CD4SISSRdata 27425992 27426266 274 8150
CTCF G2GSE9613 27425970 27426850 880 7869
CTCF G2GSE9613 27432430 27433274 844 1427
FOXA1 MCF7GSE15244 27432533 27433202 669 1411
FoxA1 MCF7MACSdata 27429024 27429373 349 5080
FoxA1 MCF7MACSdata 27432890 27433153 263 1257
RARG MCF7GSE15244 27428893 27429359 466 5153
TFAP2C MCF7GSE21234 27432617 27433170 553 1385
hScc1 BcellGSE12603 27425862 27426802 940 7947
hScc1 BcellGSE12603 27432497 27433274 777 1393
hScc1 CdLSGSE12603 27425683 27427007 1324 7934
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 27435130 27435547 417 0
CTCF G2GSE9613 27439048 27439313 265 0
CTCF G2GSE9613 27440193 27441121 928 0
Oct4 hESGSE21916 27433691 27435018 1327 0
Oct4 hESGSE21916 27437767 27439416 1649 0
TFAP2C MCF7GSE21234 27437854 27438417 563 0
hScc1 BcellGSE12603 27435054 27435502 448 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-181a hsa-mir-181a-2 9 19585654
hsa-miR-181a hsa-mir-181a-1 1 19585654
hsa-miR-181a* hsa-mir-181a-1 1 19585654
hsa-miR-181a-2* hsa-mir-181a-2 9 19585654
hsa-miR-181b hsa-mir-181b-1 1 19585654
hsa-miR-181b hsa-mir-181b-2 9 19585654
hsa-miR-181c hsa-mir-181c 19 19585654
hsa-miR-181c* hsa-mir-181c 19 19585654
hsa-miR-181d hsa-mir-181d 19 19585654
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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