AutismKB 2.0

Annotation Detail for SYNCRIP


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Basic Information Top
Gene Symbol:SYNCRIP ( FLJ31626,GRY-RBP,GRYRBP,HNRPQ1,NSAP1,PP68,dJ3J17.2,hnRNP-Q )
Gene Full Name: synaptotagmin binding, cytoplasmic RNA interacting protein
Band: 6q14.3
Quick LinksEntrez ID:10492; OMIM: NA; Uniprot ID:HNRPQ_HUMAN; ENSEMBL ID: ENSG00000135316; HGNC ID: 16918
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylalanine.
221N6-acetyllysine.
363N6-acetyllysine.
373Phosphotyrosine.
578Bipartite nuclear localization signal
587Phosphoserine.
Location(AA) Modifications Resource
373Phosphotyrosine.Swiss-Prot 53.0
373Phosphotyrosine (FGFR1)Phospho.ELM 6.0
Location(AA) Modification Resource
9N-linkedHMM predict
17O-linkedHMM predict
55Phosphoserine(CK2)HMM predict
90N-linkedHMM predict
153Phosphotyrosine(Syk)HMM predict
154O-linkedHMM predict
264Phosphoserine(CK1)HMM predict
431SulfotyrosineHMM predict
432SulfotyrosineHMM predict
433SulfotyrosineHMM predict
433Phosphotyrosine(Syk)HMM predict
446MethylarginineHMM predict
454Phosphotyrosine(Abl)HMM predict
466Phosphotyrosine(Syk)HMM predict
481Phosphotyrosine(Syk)HMM predict
481Phosphotyrosine(INSR)HMM predict
485Phosphotyrosine(Syk)HMM predict
486SulfotyrosineHMM predict
488Phosphotyrosine(Syk)HMM predict
498MethylarginineHMM predict
504MethylarginineHMM predict
510MethylarginineHMM predict
512MethylarginineHMM predict
518MethylarginineHMM predict
526MethylarginineHMM predict
539MethylarginineHMM predict
546MethylarginineHMM predict
557MethylarginineHMM predict
570Phosphotyrosine(Abl)HMM predict
570Phosphotyrosine(INSR)HMM predict
580Phosphothreonine(PKA)HMM predict
614Phosphotyrosine(Syk)HMM predict
614Phosphotyrosine(EGFR)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_006372
  • Location:chr6 86380657-86409745
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 86409881 86410583 702 487
CTCF G2GSE9613 86426791 86427044 253 17172
ER Fulvestrant-MCF7GSE14664 86418465 86418499 34 8737
H3ac HepG2E 86410607 86411301 694 1209
H3ac HepG2E 86411709 86412333 624 2276
Myc hESGSE17917 86410041 86410552 511 551
NFkBII GM15510GSE19485 86408770 86411163 2393 221
Oct1 HelaGSE14283 86409790 86409816 26 58
Oct1 HelaGSE14283 86413465 86413523 58 3749
TAF HelaGSE8489 86412975 86413270 295 3377
USF1 HepG2E 86411709 86412333 624 2276
USF2 HepG2E 86411709 86412333 624 2276
hScc1 BcellGSE12603 86409881 86410316 435 353
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 86408041 86409390 1349 0
GABP k562GSE8489 86404846 86405322 476 0
H3K4me2 HCT116GSE10453 86407085 86408464 1379 0
H3K4me3 colorectalcancer 86407165 86408650 1485 0
H3ac HepG2E 86405698 86406161 463 0
H3ac HepG2E 86406631 86408650 2019 0
H3ac HepG2E 86409029 86409390 361 0
LIN9 SGSE7516 86409072 86409390 318 0
Oct1 HelaGSE14283 86408132 86408165 33 0
PHF8 293TGSE20725 86408553 86410932 2379 0
PHF8 HeLaGSE20725 86408565 86410882 2317 0
PHF8 Hs68minusFBSGSE20725 86408870 86409850 980 0
PHF8 Hs68plusFBSGSE20725 86408079 86411163 3084 0
TAF HelaGSE8489 86405949 86408384 2435 0
TAF k562GSE8489 86404846 86405322 476 0
TAF k562GSE8489 86405698 86408604 2906 0
hScc1 BcellGSE12603 86408041 86409390 1349 0
hScc1 CdLSGSE12603 86407852 86409390 1538 0
hScc1 G2GSE9613 86408041 86409212 1171 0
p130 shRbQuiescentGSE19898 86408993 86409951 958 0
p130 shRbSenescentGSE19898 86409053 86409982 929 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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