AutismKB 2.0

Annotation Detail for CARM1


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Basic Information Top
Gene Symbol:CARM1 ( PRMT4 )
Gene Full Name: coactivator-associated arginine methyltransferase 1
Band: 19p13.2
Quick LinksEntrez ID:10498; OMIM: 603934; Uniprot ID:CARM1_HUMAN; ENSEMBL ID: ENSG00000142453; HGNC ID: 23393
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylalanine.
216Phosphoserine.
550Dimethylated arginine (By similarity).
Location(AA) Modifications Resource
Location(AA) Modification Resource
157Phosphoserine(ATM)HMM predict
179N-linkedHMM predict
230N-linkedHMM predict
246Phosphoserine(CK1)HMM predict
261Phosphotyrosine(INSR)HMM predict
303Phosphotyrosine(Syk)HMM predict
480O-linkedHMM predict
480O-linkedHMM predict
482Phosphoserine(CDC2)HMM predict
482O-linkedHMM predict
489Phosphotyrosine(INSR)HMM predict
491Phosphoserine(CDC2)HMM predict
546O-linkedHMM predict
575Phosphoserine(IKK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_199141
  • Location:chr19 10843252-10894446
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 10827953 10828115 162 15219
CTCF CD4GSE12889 10836082 10836392 310 7016
CTCF CD4GSE12889 10843033 10843272 239 100
CTCF CD4SISSRdata 10827953 10828115 162 15219
CTCF CD4SISSRdata 10836082 10836392 310 7016
CTCF CD4SISSRdata 10843033 10843272 239 100
CTCF JurkatGSE12889 10836041 10836374 333 7045
CTCF G2GSE9613 10829936 10830124 188 13223
CTCF G2GSE9613 10835045 10835287 242 8087
CTCF G2GSE9613 10836018 10836483 465 7002
CTCF G2GSE9613 10842694 10843120 426 346
ER Breast-CancerGSE22609 10834732 10835558 826 8108
FOXA1 MCF7GSE15244 10834527 10835143 616 8418
PHF8 Hs68plusFBSGSE20725 10842071 10842931 860 752
Rb SenescentGSE19898 10842486 10843160 674 430
TFAP2C MCF7GSE21234 10834909 10835427 518 8085
hScc1 BcellGSE12603 10829936 10830124 188 13223
hScc1 BcellGSE12603 10836018 10836340 322 7074
hScc1 BcellGSE12603 10842789 10843120 331 298
hScc1 CdLSGSE12603 10836018 10836789 771 6849
p130 QuiescentGSE19898 10842465 10842676 211 682
p130 SenescentGSE19898 10842949 10843126 177 215
p130 shRbQuiescentGSE19898 10842172 10842557 385 888
p130 shRbSenescentGSE19898 10842835 10843135 300 268
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 10887856 10887899 43 0
ER MCF7GSE19013 10868493 10869047 554 0
ETS1 JurkatGSE17954 10850745 10851482 737 0
H3ac HepG2E 10843917 10844947 1030 0
Myc K562GSE19551 10850704 10851448 744 0
Nanog hESGSE18292 10850896 10851105 209 0
Oct1 H2O2-HelaGSE14283 10887860 10887888 28 0
Oct1 HelaGSE14283 10860475 10860502 27 0
Oct1 HelaGSE14283 10887854 10887910 56 0
P300 T0-glioblastomaGSE21026 10850844 10851282 438 0
P300 T30-glioblastomaGSE21026 10850687 10851236 549 0
TFAP2C MCF7GSE21234 10870346 10871475 1129 0
USF1 HepG2E 10851600 10851979 379 0
hScc1 BcellGSE12603 10843451 10843695 244 0
hScc1 BcellGSE12603 10877232 10877442 210 0
p130 SenescentGSE19898 10843719 10843925 206 0
p130 shRbQuiescentGSE19898 10843704 10844193 489 0
p130 shRbSenescentGSE19898 10887285 10887501 216 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
12699 mRNA CARM1 chr19 10883878 10894744 299 mRNA MGC3262 chr19 10894445 10900357Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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