AutismKB 2.0

Annotation Detail for SEMA4D


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Basic Information Top
Gene Symbol:SEMA4D ( C9orf164,CD100,FLJ33485,FLJ34282,FLJ39737,FLJ46484,M-sema-G,MGC169138,MGC169141,SEMAJ,coll-4 )
Gene Full Name: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
Band: 9q22.2
Quick LinksEntrez ID:10507; OMIM: 601866; Uniprot ID:SEM4D_HUMAN; ENSEMBL ID: ENSG00000187764; HGNC ID: 10732
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
49N-linked (GlcNAc...).
74N-linked (GlcNAc...).
77N-linked (GlcNAc...).
139N-linked (GlcNAc...) (Potential).
191N-linked (GlcNAc...) (Potential).
195Phosphoserine.
329N-linked (GlcNAc...) (Potential).
379N-linked (GlcNAc...).
419N-linked (GlcNAc...).
613N-linked (GlcNAc...) (Potential).
632N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
49N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
77N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
139N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
191N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
195Phosphoserine.Swiss-Prot 53.0
329N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
379N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
419N-linked (GlcNAc...).Swiss-Prot 53.0
613N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
632N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
5Phosphothreonine(CDC2)HMM predict
139N-linkedHMM predict
191N-linkedHMM predict
195Phosphoserine(CDC2)HMM predict
195Phosphoserine(CDK)HMM predict
220Phosphoserine(CDK)HMM predict
220Phosphoserine(CDC2)HMM predict
223Phosphoserine(CDC2)HMM predict
223Phosphoserine(IKK)HMM predict
266Phosphothreonine(PKC)HMM predict
342Phosphotyrosine(Jak)HMM predict
379N-linkedHMM predict
385N-linkedHMM predict
419N-linkedHMM predict
436Phosphotyrosine(Syk)HMM predict
453Phosphoserine(CK1)HMM predict
535O-linkedHMM predict
537Phosphoserine(CDC2)HMM predict
551Phosphoserine(IKK)HMM predict
577Phosphoserine(ATM)HMM predict
601Phosphotyrosine(INSR)HMM predict
601Phosphotyrosine(SRC)HMM predict
632N-linkedHMM predict
657O-linkedHMM predict
676O-linkedHMM predict
680O-linkedHMM predict
680O-linkedHMM predict
681Phosphoserine(IKK)HMM predict
681Phosphoserine(ATM)HMM predict
681O-linkedHMM predict
681Phosphoserine(CDC2)HMM predict
684O-linkedHMM predict
684O-linkedHMM predict
690O-linkedHMM predict
690O-linkedHMM predict
704O-linkedHMM predict
727Phosphotyrosine(EGFR)HMM predict
749S-palmitoylHMM predict
788Phosphoserine(CK1)HMM predict
815Phosphotyrosine(Syk)HMM predict
815SulfotyrosineHMM predict
833Phosphoserine(ATM)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_006378
  • Location:chr9 91181971-91284430
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 91300851 91300886 35 16438
Nanog hESGSE18292 91294783 91295031 248 10477
Rb shRbQuiescentGSE19898 91295844 91296093 249 11538
hScc1 BcellGSE12603 91301058 91301264 206 16731
hScc1 BcellGSE12603 91301731 91302078 347 17474
hScc1 BcellGSE12603 91303169 91303336 167 18822
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 91241289 91243094 1805 0
ER E2-MCF7GSE14664 91202195 91202251 56 0
ER MCF7GSE19013 91240099 91240807 708 0
FOXA1 MCF7GSE15244 91241581 91242702 1121 0
FOXA1 MCF7GSE15244 91245237 91246599 1362 0
FOXA1 MCF7GSE15244 91278646 91279286 640 0
NFkBII GM10847GSE19485 91268192 91270467 2275 0
Nanog hESGSE18292 91217624 91218049 425 0
Nanog hESGSE18292 91239894 91240169 275 0
Oct1 H2O2-HelaGSE14283 91235723 91235754 31 0
Oct1 HelaGSE14283 91235722 91235756 34 0
Oct1 HelaGSE14283 91245572 91245645 73 0
P300 T0-glioblastomaGSE21026 91278573 91279308 735 0
P300 T30-glioblastomaGSE21026 91278643 91279496 853 0
Sox2 hESGSE18292 91239912 91240212 300 0
TFAP2C MCF7GSE21234 91241370 91242586 1216 0
TFAP2C MCF7GSE21234 91272441 91272887 446 0
VDR GM10855-stimGSE22484 91246699 91248174 1475 0
VDR GM10861-stimGSE22484 91246117 91248596 2479 0
hScc1 BcellGSE12603 91209432 91210747 1315 0
hScc1 BcellGSE12603 91213420 91213730 310 0
hScc1 BcellGSE12603 91216398 91216761 363 0
hScc1 BcellGSE12603 91231399 91231728 329 0
hScc1 BcellGSE12603 91232946 91233275 329 0
hScc1 BcellGSE12603 91233518 91234474 956 0
hScc1 BcellGSE12603 91241912 91242342 430 0
hScc1 BcellGSE12603 91268694 91269033 339 0
hScc1 BcellGSE12603 91280109 91280391 282 0
hScc1 CdLSGSE12603 91233840 91234397 557 0
p130 SenescentGSE19898 91230505 91230740 235 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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