AutismKB 2.0

Annotation Detail for SEMA3C


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Basic Information Top
Gene Symbol:SEMA3C ( SEMAE,SemE )
Gene Full Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
Band: 7q21.11
Quick LinksEntrez ID:10512; OMIM: 602645; Uniprot ID:SEM3C_HUMAN; ENSEMBL ID: ENSG00000075223; HGNC ID: 10725
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
81N-linked (GlcNAc...) (Potential).
123N-linked (GlcNAc...) (Potential).
252N-linked (GlcNAc...) (Potential).
268N-linked (GlcNAc...) (Potential).
465N-linked (GlcNAc...) (Potential).
585N-linked (GlcNAc...) (Potential).
586N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
81N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
123N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
252N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
268N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
465N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
585N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
586N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
18S-palmitoylHMM predict
46Phosphoserine(CK1)HMM predict
88Phosphoserine(ATM)HMM predict
123N-linkedHMM predict
136Phosphoserine(CDC2)HMM predict
203Phosphothreonine(PKC)HMM predict
268N-linkedHMM predict
465N-linkedHMM predict
466N-linkedHMM predict
492Phosphoserine(PKG)HMM predict
585N-linkedHMM predict
586N-linkedHMM predict
641Phosphotyrosine(INSR)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_006379
  • Location:chr7 80209790-80386602
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 80387272 80387681 409 874
FOXA1 MCF7GSE15244 80388257 80388983 726 2018
FoxA1 MCF7MACSdata 80388224 80388771 547 1895
FoxA1 MCF7MACSdata 80389565 80389757 192 3059
Oct1 HelaGSE14283 80404465 80404505 40 17883
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 80203298 80203336 38 6474
ER E2-MCF7GSE14664 80203930 80203962 32 5845
ER E2-MCF7GSE14664 80207605 80207641 36 2168
ER MCF7GSE19013 80191267 80192075 808 18120
Nanog hESGSE18292 80191286 80191966 680 18165
P300 T30-glioblastomaGSE21026 80208160 80209180 1020 1121
TFAP2C MCF7GSE21234 80196809 80197154 345 12809
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 80350081 80352854 2773 0
CTCF G2GSE9613 80384078 80384430 352 0
ER E2-MCF7GSE14664 80217328 80217421 93 0
ER E2-MCF7GSE14664 80302251 80302294 43 0
ER E2-MCF7GSE14664 80352467 80352500 33 0
ER Fulvestrant-MCF7GSE14664 80308297 80308337 40 0
ER MCF7GSE19013 80343974 80344530 556 0
FOXA1 MCF7GSE15244 80343908 80344672 764 0
FoxA1 MCF7MACSdata 80325436 80325659 223 0
FoxA1 MCF7MACSdata 80344071 80344550 479 0
FoxA1 MCF7MACSdata 80350471 80350734 263 0
FoxA1 MCF7MACSdata 80380830 80381201 371 0
H3K4me3 colorectalcancer 80385650 80386175 525 0
Nanog ESGSE20650 80231252 80231975 723 0
Nanog ESGSE20650 80239602 80239912 310 0
Oct1 H2O2-HelaGSE14283 80225459 80225511 52 0
Oct1 H2O2-HelaGSE14283 80233840 80233869 29 0
Oct1 H2O2-HelaGSE14283 80242496 80242524 28 0
Oct1 H2O2-HelaGSE14283 80248598 80248628 30 0
Oct1 H2O2-HelaGSE14283 80263326 80263356 30 0
Oct1 H2O2-HelaGSE14283 80355562 80355589 27 0
Oct1 HelaGSE14283 80225659 80225691 32 0
Oct1 HelaGSE14283 80228822 80228894 72 0
Oct1 HelaGSE14283 80233840 80233871 31 0
Oct1 HelaGSE14283 80242496 80242525 29 0
Oct1 HelaGSE14283 80246001 80246043 42 0
Oct1 HelaGSE14283 80248597 80248639 42 0
Oct1 HelaGSE14283 80277057 80277097 40 0
Oct1 HelaGSE14283 80280911 80280942 31 0
Oct1 HelaGSE14283 80302250 80302294 44 0
Oct1 HelaGSE14283 80308297 80308337 40 0
Oct1 HelaGSE14283 80320315 80320345 30 0
Oct1 HelaGSE14283 80324369 80324415 46 0
Oct1 HelaGSE14283 80328347 80328380 33 0
Oct1 HelaGSE14283 80349672 80349700 28 0
Oct1 HelaGSE14283 80351601 80351628 27 0
Oct1 HelaGSE14283 80352443 80352498 55 0
Oct1 HelaGSE14283 80361083 80361123 40 0
Oct1 HelaGSE14283 80366209 80366253 44 0
Oct1 HelaGSE14283 80375243 80375297 54 0
P300 T30-glioblastomaGSE21026 80350020 80352647 2627 0
RARA MCF7GSE15244 80340318 80340515 197 0
RARA MCF7GSE15244 80343908 80344765 857 0
RARA MCF7GSE15244 80350273 80351792 1519 0
RNAII Tamoxifen-MCF7GSE14664 80228866 80228902 36 0
Stat6 IL-4-hr1GSE17850 80340242 80340784 542 0
TFAP2C MCF7GSE21234 80248797 80249218 421 0
TFAP2C MCF7GSE21234 80350598 80351177 579 0
p63 keratinocytesGSE17611 80240923 80241597 674 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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