Annotation Detail for AGPAT2

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Basic Information Top

Gene Symbol:	AGPAT2 ( 1-AGPAT2,BSCL,BSCL1,LPAAB,LPAAT-beta )
Gene Full Name:	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
Band:	9q34.3
Quick Links	Entrez ID:10555; OMIM: 603100; Uniprot ID:PLCB_HUMAN; ENSEMBL ID: ENSG00000169692; HGNC ID: 325
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:3 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:3 results

Location(AA)	Modification
103	HXXXXD motif.
255	Phosphothreonine (By similarity).
260	Phosphoserine (By similarity).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_001012727
Location:chr9 138687415-138701731
strand:-

Upstream the gene:9 results
Downstream the gene:0 results
Inside the gene:12 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ER	MCF7	GSE19013	138707882	138708697	815	6558
Fos	K562	GSE19551	138707887	138708616	729	6520
Nanog	hES	GSE18292	138702623	138702806	183	983
TFAP2C	MCF7	GSE21234	138707745	138709158	1413	6720
TFAP2C	MCF7	GSE21234	138709591	138710691	1100	8410
hScc1	Bcell	GSE12603	138708059	138708345	286	6471
hScc1	Bcell	GSE12603	138708738	138709265	527	7270
hScc1	Bcell	GSE12603	138709986	138710463	477	8493
p63	keratinocytes	GSE17611	138711469	138712255	786	10131

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
PHF8	HeLa	GSE20725	138700540	138702660	2120	0
PHF8	Hs68plusFBS	GSE20725	138701118	138701823	705	0
STAT1	IFN	SISSRdata	138689142	138689769	627	0
TFAP2C	MCF7	GSE21234	138689263	138689943	680	0
TFAP2C	MCF7	GSE21234	138693438	138694407	969	0
TFAP2C	MCF7	GSE21234	138696660	138697545	885	0
TFAP2C	MCF7	GSE21234	138699656	138700223	567	0
hScc1	Bcell	GSE12603	138687319	138688437	1118	0
hScc1	Bcell	GSE12603	138690344	138691826	1482	0
hScc1	Bcell	GSE12603	138699893	138700148	255	0
hScc1	Bcell	GSE12603	138700815	138701541	726	0
p130	shRbSenescent	GSE19898	138701351	138701717	366	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
27228	EST		chr9	136842302	136843459	27	mRNA	AGPAT2	chr9	136843432	136857712	Non-exonic Bidirectional (NOB) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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