AutismKB 2.0

Annotation Detail for GNA13


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Basic Information Top
Gene Symbol:GNA13 ( G13,MGC46138 )
Gene Full Name: guanine nucleotide binding protein (G protein), alpha 13
Band: 17q24.1
Quick LinksEntrez ID:10672; OMIM: 604406; Uniprot ID:GNA13_HUMAN; ENSEMBL ID: ENSG00000120063; HGNC ID: 4381
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
203Phosphothreonine; by PKA.
Location(AA) Modifications Resource
14S-palmitoyl cysteine.Swiss-Prot 53.0
18S-palmitoyl cysteine.Swiss-Prot 53.0
203Phosphothreonine (by PKA).Swiss-Prot 53.0
203Phosphothreonine (PKA
Location(AA) Modification Resource
18S-palmitoylHMM predict
189Phosphotyrosine(EGFR)HMM predict
189Phosphotyrosine(INSR)HMM predict
189SulfotyrosineHMM predict
192Phosphoserine(ATM)HMM predict
250Phosphoserine(CK2)HMM predict
291N-linkedHMM predict
375MethionineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_006572
  • Location:chr17 60437295-60483215
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FoxA1 MCF7MACSdata 60501396 60501742 346 18354
P300 T30-glioblastomaGSE21026 60490813 60491963 1150 8173
PHF8 293TGSE20725 60482563 60483935 1372 34
RARA MCF7GSE15244 60484351 60485498 1147 1709
RARA MCF7GSE15244 60490946 60491416 470 7966
RARG MCF7GSE15244 60484176 60485251 1075 1498
RARG MCF7GSE15244 60490946 60491416 470 7966
Rb QuiescentGSE19898 60491130 60491273 143 7986
Rb SenescentGSE19898 60490975 60491270 295 7907
TFAP2C MCF7GSE21234 60501251 60501833 582 18327
USF1 HepG2E 60484176 60485498 1322 1622
hScc1 BcellGSE12603 60482707 60483816 1109 46
p130 QuiescentGSE19898 60491302 60491517 215 8194
p130 QuiescentGSE19898 60501460 60501632 172 18331
p130 SenescentGSE19898 60483473 60483934 461 488
p130 SenescentGSE19898 60491179 60491637 458 8193
p130 shRbQuiescentGSE19898 60483536 60483892 356 499
p130 shRbQuiescentGSE19898 60490923 60491499 576 7996
p63 keratinocytesGSE17611 60484795 60485866 1071 2115
p63 keratinocytesGSE17611 60490608 60491715 1107 7946
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 60421446 60421767 321 15689
ER MCF7GSE19013 60427901 60428823 922 8934
Fos K562GSE19551 60418841 60419263 422 18244
Nanog ESGSE20650 60433663 60434136 473 3396
Oct1 H2O2-HelaGSE14283 60435060 60435099 39 2216
Oct1 HelaGSE14283 60435060 60435088 28 2222
RARA MCF7GSE15244 60420574 60421152 578 16433
RARA MCF7GSE15244 60430054 60430951 897 6793
RARG MCF7GSE15244 60420574 60421152 578 16433
RARG MCF7GSE15244 60430054 60430951 897 6793
TFAP2C MCF7GSE21234 60418763 60419489 726 18170
hScc1 BcellGSE12603 60428021 60428448 427 9061
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 60453971 60454274 303 0
CTCF CD4SISSRdata 60453971 60454274 303 0
Fos K562GSE19551 60454000 60454365 365 0
H3K4me3 colorectalcancer 60480767 60482356 1589 0
H3ac HepG2E 60481267 60482292 1025 0
Oct1 H2O2-HelaGSE14283 60440693 60440722 29 0
Oct1 H2O2-HelaGSE14283 60467502 60467530 28 0
P300 T30-glioblastomaGSE21026 60474828 60475701 873 0
PHF8 HeLaGSE20725 60482041 60484287 2246 0
Rb QuiescentGSE19898 60482388 60482956 568 0
Rb SenescentGSE19898 60482201 60482841 640 0
hScc1 BcellGSE12603 60482146 60482392 246 0
hScc1 CdLSGSE12603 60481699 60483816 2117 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7b hsa-let-7b 22 18668040
hsa-let-7b* hsa-let-7b 22 18668040
hsa-miR-1 hsa-mir-1-2 18 18668040
hsa-miR-1 hsa-mir-1-1 20 18668040
hsa-miR-155 hsa-mir-155 21 18668040
hsa-miR-155* hsa-mir-155 21 18668040
hsa-miR-16 hsa-mir-16-1 13 18668040
hsa-miR-16 hsa-mir-16-2 3 18668040
hsa-miR-30a hsa-mir-30a 6 18668040
hsa-miR-30a* hsa-mir-30a 6 18668040
hsa-miR-30b hsa-mir-30b 8 18668040
hsa-miR-30b* hsa-mir-30b 8 18668040
hsa-miR-30c hsa-mir-30c-2 6 18668040
hsa-miR-30c hsa-mir-30c-1 1 18668040
hsa-miR-30c-1* hsa-mir-30c-1 1 18668040
hsa-miR-30c-2* hsa-mir-30c-2 6 18668040
hsa-miR-30d hsa-mir-30d 8 18668040
hsa-miR-30d* hsa-mir-30d 8 18668040
hsa-miR-30e hsa-mir-30e 1 18668040
hsa-miR-30e* hsa-mir-30e 1 18668040
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
960 Unknown pSILAC miR-155 GNA13 down 50-25% 18668040
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000120063 n_a n_a n_a "epithelium, lymphocyte, leukocyte, macrophage, muscle cell" "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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