AutismKB 2.0

Annotation Detail for RAI1


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Basic Information Top
Gene Symbol:RAI1 ( DKFZp434A139,KIAA1820,MGC12824,SMCR,SMS )
Gene Full Name: retinoic acid induced 1
Band: 17p11.2
Quick LinksEntrez ID:10743; OMIM: 607642; Uniprot ID:RAI1_HUMAN; ENSEMBL ID: ENSG00000108557; HGNC ID: 9834
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
345Phosphoserine.
568Phosphoserine.
571Phosphoserine.
574Phosphoserine.
683Phosphoserine.
696Phosphothreonine.
774N6-acetyllysine.
880Phosphoserine.
892Phosphoserine.
1064Phosphoserine.
1068Phosphothreonine.
1107Phosphoserine.
1108Phosphoserine.
1110Phosphoserine.
1119Phosphoserine.
1122Phosphoserine.
1126Phosphoserine.
1177Nuclear localization signal (Potential).
1240Nuclear localization signal (Potential).
1338Phosphoserine.
1352Phosphoserine.
1358Phosphoserine.
1374Phosphoserine.
1431Phosphoserine.
1476Phosphothreonine.
Location(AA) Modifications Resource
568Phosphoserine.Swiss-Prot 53.0
568PhosphoserinePhospho.ELM 6.0
571Phosphoserine.Swiss-Prot 53.0
571PhosphoserinePhospho.ELM 6.0
574Phosphoserine.Swiss-Prot 53.0
574PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
17Phosphotyrosine(EGFR)HMM predict
50Phosphotyrosine(Jak)HMM predict
50Phosphotyrosine(Syk)HMM predict
51Phosphotyrosine(Jak)HMM predict
51Phosphotyrosine(Jak)HMM predict
51Phosphotyrosine(Syk)HMM predict
65Phosphothreonine(MAPK)HMM predict
65Phosphothreonine(CDK)HMM predict
65PhosphothreonineHMM predict
67O-linkedHMM predict
67O-linkedHMM predict
67O-linkedHMM predict
69O-linkedHMM predict
69O-linkedHMM predict
157Phosphotyrosine(Syk)HMM predict
199Phosphoserine(MAPK)HMM predict
218O-linkedHMM predict
223Phosphoserine(CK1)HMM predict
238O-linkedHMM predict
240O-linkedHMM predict
256O-linkedHMM predict
275Phosphoserine(PKG)HMM predict
275Phosphoserine(CAMK2)HMM predict
330Phosphothreonine(CDK)HMM predict
335Phosphotyrosine(EGFR)HMM predict
335Phosphotyrosine(Syk)HMM predict
339Phosphoserine(CDC2)HMM predict
339Phosphoserine(CDK)HMM predict
345Phosphoserine(CDC2)HMM predict
345Phosphoserine(IKK)HMM predict
353Phosphoserine(CDC2)HMM predict
355Phosphoserine(IKK)HMM predict
355Phosphoserine(PKB)HMM predict
355PhosphoserineHMM predict
357O-linkedHMM predict
359O-linkedHMM predict
359Phosphothreonine(MAPK)HMM predict
361O-linkedHMM predict
361Phosphoserine(CDC2)HMM predict
361Phosphoserine(CDK)HMM predict
397N-linkedHMM predict
399Phosphoserine(CDC2)HMM predict
404O-linkedHMM predict
406O-linkedHMM predict
409O-linkedHMM predict
444N-linkedHMM predict
447N-linkedHMM predict
472Phosphothreonine(CDC2)HMM predict
482Phosphoserine(ATM)HMM predict
489O-linkedHMM predict
495O-linkedHMM predict
495Phosphothreonine(MAPK)HMM predict
498O-linkedHMM predict
502O-linkedHMM predict
503O-linkedHMM predict
503O-linkedHMM predict
504O-linkedHMM predict
504Phosphothreonine(CDC2)HMM predict
504Phosphothreonine(MAPK)HMM predict
504Phosphothreonine(CDK)HMM predict
504PhosphothreonineHMM predict
519Phosphoserine(CK2)HMM predict
519Phosphoserine(ATM)HMM predict
538Phosphoserine(CDC2)HMM predict
552Phosphoserine(IKK)HMM predict
554Phosphoserine(PKA)HMM predict
554Phosphoserine(IKK)HMM predict
557O-linkedHMM predict
559O-linkedHMM predict
560O-linkedHMM predict
645N-linkedHMM predict
696O-linkedHMM predict
696Phosphothreonine(CDC2)HMM predict
696Phosphothreonine(MAPK)HMM predict
703Phosphothreonine(PKA)HMM predict
733O-linkedHMM predict
892Phosphoserine(CDC2)HMM predict
892Phosphoserine(MAPK)HMM predict
892Phosphoserine(CDK)HMM predict
892Phosphoserine(ATM)HMM predict
968O-linkedHMM predict
997Phosphoserine(PKB)HMM predict
1046MethylarginineHMM predict
1068Phosphothreonine(CDC2)HMM predict
1068Phosphothreonine(MAPK)HMM predict
1075O-linkedHMM predict
1076O-linkedHMM predict
1077O-linkedHMM predict
1077Phosphothreonine(CDC2)HMM predict
1094Phosphoserine(CDK)HMM predict
1102Phosphoserine(CDC2)HMM predict
1108O-linkedHMM predict
1108Phosphoserine(CDC2)HMM predict
1108Phosphoserine(CDK)HMM predict
1108Phosphoserine(IKK)HMM predict
1110O-linkedHMM predict
1119O-linkedHMM predict
1122O-linkedHMM predict
1133Phosphoserine(CDC2)HMM predict
1133Phosphoserine(IKK)HMM predict
1136Phosphothreonine(CDC2)HMM predict
1136Phosphothreonine(MAPK)HMM predict
1136Phosphothreonine(CDK)HMM predict
1190Phosphoserine(PKG)HMM predict
1192Phosphoserine(CDC2)HMM predict
1234Phosphothreonine(PKC)HMM predict
1246PhosphoserineHMM predict
1247Phosphoserine(PKA)HMM predict
1247Phosphoserine(CK1)HMM predict
1249Phosphoserine(IKK)HMM predict
1250N-linkedHMM predict
1254N-linkedHMM predict
1275Phosphoserine(CDC2)HMM predict
1338Phosphoserine(MAPK)HMM predict
1352O-linkedHMM predict
1352Phosphoserine(CDC2)HMM predict
1358Phosphoserine(MAPK)HMM predict
1369O-linkedHMM predict
1394Phosphoserine(IKK)HMM predict
1402N-linkedHMM predict
1404Phosphothreonine(PKA)HMM predict
1405N-linkedHMM predict
1431Phosphoserine(MAPK)HMM predict
1448Phosphoserine(PKC)HMM predict
1468Phosphotyrosine(Syk)HMM predict
1482O-linkedHMM predict
1508Phosphoserine(ATM)HMM predict
1530N-linkedHMM predict
1541Phosphothreonine(PKC)HMM predict
1547N-linkedHMM predict
1551Phosphoserine(CDC2)HMM predict
1612O-linkedHMM predict
1629Phosphoserine(IKK)HMM predict
1639Phosphoserine(IKK)HMM predict
1641O-linkedHMM predict
1641Phosphoserine(CK1)HMM predict
1663O-linkedHMM predict
1687S-palmitoylHMM predict
1688S-palmitoylHMM predict
1690S-palmitoylHMM predict
1771Phosphothreonine(PKC)HMM predict
1869S-palmitoylHMM predict
1870S-palmitoylHMM predict
1874S-palmitoylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_030665
  • Location:chr17 17525511-17655487
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 17525148 17525425 277 225
CTCF CD4SISSRdata 17525148 17525425 277 225
CTCF G2GSE9613 17507409 17507658 249 17978
CTCF G2GSE9613 17511863 17512114 251 13523
P300 T30-glioblastomaGSE21026 17506987 17508009 1022 18014
TFAP2C MCF7GSE21234 17520166 17520653 487 5102
hScc1 BcellGSE12603 17509541 17509767 226 15858
hScc1 BcellGSE12603 17510233 17510485 252 15153
hScc1 BcellGSE12603 17512256 17512539 283 13114
hScc1 BcellGSE12603 17513120 17513555 435 12174
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 17600409 17603851 3442 0
CTCF CD4GSE12889 17573783 17574034 251 0
CTCF CD4SISSRdata 17573783 17574034 251 0
CTCF JurkatGSE12889 17573715 17573968 253 0
CTCF G2GSE9613 17524966 17526919 1953 0
CTCF G2GSE9613 17530487 17530996 509 0
CTCF G2GSE9613 17536094 17536388 294 0
CTCF G2GSE9613 17537621 17537990 369 0
CTCF G2GSE9613 17542447 17542658 211 0
CTCF G2GSE9613 17568614 17569051 437 0
CTCF G2GSE9613 17573793 17574516 723 0
CTCF G2GSE9613 17595633 17596785 1152 0
CTCF G2GSE9613 17605932 17606345 413 0
CTCF G2GSE9613 17610631 17610882 251 0
CTCF G2GSE9613 17612439 17612706 267 0
CTCF G2GSE9613 17628236 17629128 892 0
CTCF G2GSE9613 17637080 17637388 308 0
CTCF G2GSE9613 17638338 17638670 332 0
CTCF G2GSE9613 17641614 17642588 974 0
CTCF G2GSE9613 17653482 17654142 660 0
ER E2-MCF7GSE14664 17582164 17582198 34 0
ER MCF7GSE19013 17535956 17536436 480 0
ER MCF7GSE19013 17574912 17575574 662 0
ER MCF7GSE19013 17599263 17600062 799 0
ETS1 JurkatGSE17954 17593445 17594500 1055 0
Fos K562GSE19551 17529813 17530251 438 0
Fos K562GSE19551 17593919 17594474 555 0
H3ac HepG2E 17534709 17536256 1547 0
H3ac HepG2E 17562792 17563143 351 0
NFkBII GM12878GSE19485 17535189 17536855 1666 0
NRSF mAbJurkat 17560753 17561309 556 0
Nanog ESGSE20650 17544182 17545088 906 0
Nanog hESGSE18292 17544388 17544644 256 0
Oct1 HelaGSE14283 17558805 17558863 58 0
Oct4 hESGSE21916 17544226 17545194 968 0
P300 T30-glioblastomaGSE21026 17554510 17555679 1169 0
RARA MCF7GSE15244 17558291 17558723 432 0
RARG MCF7GSE15244 17529495 17530233 738 0
RARG MCF7GSE15244 17533312 17533622 310 0
RARG MCF7GSE15244 17534709 17535496 787 0
RARG MCF7GSE15244 17541257 17541753 496 0
RARG MCF7GSE15244 17558291 17558900 609 0
STAT1 IFNSISSRdata 17554687 17555616 929 0
TFAP2C MCF7GSE21234 17529646 17530782 1136 0
TFAP2C MCF7GSE21234 17537303 17538112 809 0
TFAP2C MCF7GSE21234 17538983 17539631 648 0
TFAP2C MCF7GSE21234 17542937 17543648 711 0
TFAP2C MCF7GSE21234 17554734 17555770 1036 0
TFAP2C MCF7GSE21234 17572510 17573428 918 0
TFAP2C MCF7GSE21234 17589523 17590048 525 0
TFAP2C MCF7GSE21234 17627343 17627663 320 0
TFAP2C MCF7GSE21234 17650457 17651066 609 0
TFAP2C MCF7GSE21234 17651393 17652397 1004 0
USF1 HepG2E 17592193 17594096 1903 0
USF1 HepG2E 17594774 17596187 1413 0
hScc1 BcellGSE12603 17524480 17527837 3357 0
hScc1 BcellGSE12603 17537990 17538699 709 0
hScc1 BcellGSE12603 17566367 17567494 1127 0
hScc1 BcellGSE12603 17568063 17568939 876 0
hScc1 BcellGSE12603 17573718 17574156 438 0
hScc1 BcellGSE12603 17576825 17577257 432 0
hScc1 BcellGSE12603 17587304 17587647 343 0
hScc1 BcellGSE12603 17592990 17593464 474 0
hScc1 BcellGSE12603 17595265 17597236 1971 0
hScc1 BcellGSE12603 17618421 17618732 311 0
hScc1 BcellGSE12603 17625912 17626112 200 0
hScc1 BcellGSE12603 17627495 17628298 803 0
hScc1 BcellGSE12603 17628952 17629164 212 0
hScc1 BcellGSE12603 17637640 17638670 1030 0
hScc1 BcellGSE12603 17640226 17640791 565 0
hScc1 BcellGSE12603 17643728 17644531 803 0
hScc1 BcellGSE12603 17645724 17646429 705 0
hScc1 BcellGSE12603 17653438 17654073 635 0
hScc1 CdLSGSE12603 17524966 17527191 2225 0
hScc1 CdLSGSE12603 17538212 17539160 948 0
hScc1 CdLSGSE12603 17568540 17569617 1077 0
hScc1 CdLSGSE12603 17573718 17574192 474 0
hScc1 CdLSGSE12603 17626864 17627717 853 0
p130 shRbQuiescentGSE19898 17537853 17538797 944 0
p130 shRbSenescentGSE19898 17630135 17630381 246 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
10725 mRNA RAI1 chr17 17525511 17655488 100 mRNA SREBF1 chr17 17655388 17656095Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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