Annotation Detail for KDM5B
Basic Information
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| Gene Symbol: | KDM5B ( CT31,FLJ10538,FLJ12459,FLJ12491,FLJ16281,FLJ23670,JARID1B,PLU-1,PLU1,PUT1,RBBP2H1A ) |
|---|
| Gene Full Name: | lysine (K)-specific demethylase 5B |
|---|
| Band: | 1q32.1 |
|---|
| Quick Links | Entrez ID:10765; OMIM: 605393; Uniprot ID:KDM5B_HUMAN; ENSEMBL ID: ENSG00000117139; HGNC ID: 18039 |
|---|
| Relate to Another Database: |
SFARIGene;
denovo-db |
| Location(AA) |
Modification |
|---|
| 1383 | Phosphoserine. |
| 1384 | Phosphoserine. |
| 1405 | Phosphoserine. |
| Location(AA) |
Modifications |
Resource |
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
- RefSeq ID: NM_006618
- Location:chr1 200963155-201044171
- strand:-
| Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
|---|
| CTCF |
G2 | GSE9613 | 201046549 |
201047036 |
487 |
2621 |
| H3K4me3 |
colorectal | cancer | 201044416 |
201045176 |
760 |
625 |
| HIF1 |
Hypo | HepG2 | 201046822 |
201047779 |
957 |
3129 |
| PHF8 |
Hs68minusFBS | GSE20725 | 201045976 |
201047328 |
1352 |
2481 |
| PHF8 |
Hs68plusFBS | GSE20725 | 201045947 |
201047300 |
1353 |
2452 |
| Rb |
Growing | GSE19898 | 201062233 |
201062421 |
188 |
18156 |
| TAF |
k562 | GSE8489 | 201044528 |
201045448 |
920 |
817 |
| TFAP2C |
MCF7 | GSE21234 | 201048064 |
201048851 |
787 |
4286 |
| USF1 |
HepG2 | E | 201055384 |
201056114 |
730 |
11578 |
| hScc1 |
Bcell | GSE12603 | 201046254 |
201047481 |
1227 |
2696 |
| p130 |
Senescent | GSE19898 | 201046382 |
201046819 |
437 |
2429 |
| p130 |
Senescent | GSE19898 | 201046896 |
201047096 |
200 |
2825 |
| p130 |
shRbQuiescent | GSE19898 | 201046207 |
201046685 |
478 |
2275 |
| p130 |
shRbQuiescent | GSE19898 | 201046733 |
201047213 |
480 |
2802 |
| p130 |
shRbSenescent | GSE19898 | 201046388 |
201047219 |
831 |
2632 |
| Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
|---|
| CTCF |
CD4 | GSE12889 | 200955376 |
200955794 |
418 |
7571 |
| CTCF |
CD4 | SISSRdata | 200955376 |
200955794 |
418 |
7571 |
| CTCF |
Jurkat | GSE12889 | 200955423 |
200955601 |
178 |
7644 |
| CTCF |
G2 | GSE9613 | 200955381 |
200955727 |
346 |
7602 |
| Rb |
Growing | GSE19898 | 200960705 |
200960910 |
205 |
2348 |
| hScc1 |
Bcell | GSE12603 | 200955309 |
200955727 |
418 |
7638 |
| hScc1 |
CdLS | GSE12603 | 200955309 |
200955727 |
418 |
7638 |
| hScc1 |
G2 | GSE9613 | 200955381 |
200955727 |
346 |
7602 |
| Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
|---|
| CTCF |
CD4 | GSE12889 | 200986659 |
200986761 |
102 |
0 |
| CTCF |
CD4 | SISSRdata | 200986659 |
200986761 |
102 |
0 |
| FoxA1 |
MCF7 | MACSdata | 200985733 |
200985955 |
222 |
0 |
| H3K4me3 |
colorectal | cancer | 201041737 |
201042642 |
905 |
0 |
| H3ac |
HepG2 | E | 201041631 |
201042418 |
787 |
0 |
| Myc |
K562 | GSE19551 | 201025421 |
201025709 |
288 |
0 |
| Pol2 |
GM12878 | GSE19551 | 201043809 |
201044269 |
460 |
0 |
| RARA |
MCF7 | GSE15244 | 200984613 |
200984994 |
381 |
0 |
| TAF |
k562 | GSE8489 | 201040017 |
201042508 |
2491 |
0 |
| hScc1 |
Bcell | GSE12603 | 201042786 |
201043856 |
1070 |
0 |
| p130 |
Quiescent | GSE19898 | 201044054 |
201044289 |
235 |
0 |
| p130 |
Senescent | GSE19898 | 201042701 |
201042973 |
272 |
0 |
| Cluster ID |
Plue Type |
Plus Gene Name |
Plus Chromosome |
Plus Start |
Plus End |
Overlap Length |
Minus Type |
Minus Gene Name |
Minus Chromosome |
Minus Star |
Minus End |
Type |
|---|
| 2171 |
mRNA |
|
chr1 |
199508446 |
199510244 |
320 |
mRNA |
JARID1B |
chr1 |
199428188 |
199509206 | Sense/Antisense (SA) pairs |
|
Validated miRNA targets