Annotation Detail for RPP40
Basic Information Top
| Gene Symbol: | RPP40 ( RNASEP1,bA428J1.3 ) |
|---|---|
| Gene Full Name: | ribonuclease P/MRP 40kDa subunit |
| Band: | 6p25.1 |
| Quick Links | Entrez ID:10799; OMIM: 606117; Uniprot ID:RPP40_HUMAN; ENSEMBL ID: ENSG00000124787; HGNC ID: 20992 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 64 | Phosphotyrosine(Syk) | HMM predict |
| 74 | Phosphoserine(ATM) | HMM predict |
| 102 | Phosphotyrosine(INSR) | HMM predict |
| 102 | Phosphotyrosine(Syk) | HMM predict |
| 153 | Phosphothreonine(PKC) | HMM predict |
| 209 | O-linked | HMM predict |
- RefSeq ID: NM_006638
- Location:chr6 4940279-4949269
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| ETS1 | Jurkat | GSE17954 | 4948638 | 4950012 | 1374 | 56 |
| H3ac | HepG2 | E | 4949614 | 4950229 | 615 | 652 |
| H3ac | HepG2 | E | 4951101 | 4951579 | 478 | 2071 |
| RARA | MCF7 | GSE15244 | 4958704 | 4958944 | 240 | 9555 |
| Stat6 | IL-4-hr1 | GSE17850 | 4949785 | 4950336 | 551 | 791 |
| TAF | k562 | GSE8489 | 4950064 | 4950229 | 165 | 877 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 4930195 | 4930615 | 420 | 9875 |
| Fos | K562 | GSE19551 | 4929857 | 4930634 | 777 | 10034 |
| Oct1 | H2O2-Hela | GSE14283 | 4940250 | 4940281 | 31 | 14 |
| Oct1 | Hela | GSE14283 | 4940251 | 4940280 | 29 | 14 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 4948640 | 4949682 | 1042 | 0 |
| H3ac | HepG2 | E | 4947731 | 4948274 | 543 | 0 |
| Myc | K562 | GSE19551 | 4943215 | 4943529 | 314 | 0 |
| Oct1 | Hela | GSE14283 | 4943294 | 4943324 | 30 | 0 |
| Oct1 | Hela | GSE14283 | 4947516 | 4947545 | 29 | 0 |
| PHF8 | HeLa | GSE20725 | 4948460 | 4949982 | 1522 | 0 |
| hScc1 | Bcell | GSE12603 | 4948606 | 4949475 | 869 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22081 | mRNA | LOC285778 | chr6 | 4949048 | 5185728 | 80 | mRNA | RPP40 | chr6 | 4940279 | 4949270 | Sense/Antisense (SA) pairs |