Annotation Detail for SEC24A
Basic Information Top
| Gene Symbol: | SEC24A ( - ) |
|---|---|
| Gene Full Name: | SEC24 family, member A (S. cerevisiae) |
| Band: | 5q31.1 |
| Quick Links | Entrez ID:10802; OMIM: 607183; Uniprot ID:SC24A_HUMAN; ENSEMBL ID: ENSG00000113615; HGNC ID: 10703 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 47 | N-linked | HMM predict |
| 64 | Phosphoserine(ATM) | HMM predict |
| 70 | Phosphothreonine(PKC) | HMM predict |
| 78 | O-linked | HMM predict |
| 82 | Phosphothreonine(MAPK) | HMM predict |
| 87 | Phosphoserine(IKK) | HMM predict |
| 104 | Phosphothreonine(MAPK) | HMM predict |
| 104 | O-linked | HMM predict |
| 104 | O-linked | HMM predict |
| 108 | O-linked | HMM predict |
| 132 | Phosphoserine(IKK) | HMM predict |
| 142 | Phosphoserine(IKK) | HMM predict |
| 142 | Phosphoserine(CK1) | HMM predict |
| 142 | Phosphoserine(PKG) | HMM predict |
| 145 | O-linked | HMM predict |
| 149 | N-linked | HMM predict |
| 155 | N-linked | HMM predict |
| 210 | Phosphothreonine(MAPK) | HMM predict |
| 239 | N-linked | HMM predict |
| 248 | Phosphotyrosine(EGFR) | HMM predict |
| 279 | O-linked | HMM predict |
| 286 | N-linked | HMM predict |
| 287 | O-linked | HMM predict |
| 288 | O-linked | HMM predict |
| 293 | O-linked | HMM predict |
| 348 | Phosphothreonine(CDK) | HMM predict |
| 470 | N-linked | HMM predict |
| 506 | Phosphotyrosine(Jak) | HMM predict |
| 513 | Phosphoserine(IKK) | HMM predict |
| 546 | Phosphoserine(IKK) | HMM predict |
| 548 | Phosphoserine(ATM) | HMM predict |
| 548 | Phosphoserine(CK1) | HMM predict |
| 548 | Phosphoserine(IKK) | HMM predict |
| 658 | Phosphotyrosine(Syk) | HMM predict |
| 725 | Phosphothreonine(PKC) | HMM predict |
| 770 | Phosphotyrosine(Syk) | HMM predict |
| 775 | Phosphoserine(IKK) | HMM predict |
| 779 | Phosphoserine(CK1) | HMM predict |
| 779 | Phosphoserine(IKK) | HMM predict |
| 840 | Phosphoserine(IKK) | HMM predict |
| 938 | Phosphoserine(CK1) | HMM predict |
| 944 | N-linked | HMM predict |
| 984 | N-linked | HMM predict |
| 988 | N-linked | HMM predict |
| 1014 | Phosphothreonine(MAPK) | HMM predict |
| 1076 | Valine | HMM predict |
- RefSeq ID: NM_021982
- Location:chr5 134012377-134091498
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| ETS1 | Jurkat | GSE17954 | 134011579 | 134012783 | 1204 | 197 |
| H3K4me2 | HCT116 | GSE10453 | 134011624 | 134012111 | 487 | 510 |
| H3K4me3 | colorectal | cancer | 134011663 | 134012111 | 448 | 491 |
| H3ac | HepG2 | E | 134011354 | 134012147 | 793 | 627 |
| Oct4 | hES | GSE17917 | 134012200 | 134012421 | 221 | 67 |
| TAF | Hela | GSE8489 | 134011354 | 134012307 | 953 | 547 |
| TAF | k562 | GSE8489 | 134011354 | 134012266 | 912 | 568 |
| USF1 | HepG2 | E | 134011465 | 134012111 | 646 | 590 |
| hScc1 | Bcell | GSE12603 | 134012111 | 134012507 | 396 | 69 |
| p130 | Quiescent | GSE19898 | 134011860 | 134012340 | 480 | 278 |
| p130 | Senescent | GSE19898 | 134011701 | 134012280 | 579 | 387 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 134012147 | 134012821 | 674 | 0 |
| GABP | k562 | GSE8489 | 134011354 | 134013790 | 2436 | 0 |
| H3K4me3 | colorectal | cancer | 134012744 | 134014101 | 1357 | 0 |
| H3ac | HepG2 | E | 134012701 | 134013447 | 746 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 134018970 | 134019011 | 41 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 134036096 | 134036130 | 34 | 0 |
| Oct1 | Hela | GSE14283 | 134036096 | 134036134 | 38 | 0 |
| Oct1 | Hela | GSE14283 | 134038052 | 134038086 | 34 | 0 |
| Oct1 | Hela | GSE14283 | 134080030 | 134080057 | 27 | 0 |
| STAT1 | HeLa | GSE12782 | 134021803 | 134022838 | 1035 | 0 |
| STAT1 | HeLa | GSE12783 | 134021837 | 134022838 | 1001 | 0 |
| STAT1 | IFN | SISSRdata | 134021780 | 134022654 | 874 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7b | hsa-let-7b | 22 | 18668040 |
| hsa-let-7b* | hsa-let-7b | 22 | 18668040 |
| hsa-miR-1 | hsa-mir-1-2 | 18 | 18668040 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 18668040 |
| hsa-miR-155 | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-155* | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-16 | hsa-mir-16-1 | 13 | 18668040 |
| hsa-miR-16 | hsa-mir-16-2 | 3 | 18668040 |
| hsa-miR-30a | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30a* | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30b | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30b* | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-1* | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-2* | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30d | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30d* | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30e | hsa-mir-30e | 1 | 18668040 |
| hsa-miR-30e* | hsa-mir-30e | 1 | 18668040 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 1092 | Unknown | pSILAC | miR-16 | SEC24A | down 50-25% | 18668040 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000113615 | n_a | n_a | n_a | "leukocyte, lymphocyte, muscle cell" | "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma" |
| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21479 | mRNA | SEC24A | chr5 | 134012412 | 134057286 | 350 | mRNA | SARA2 | chr5 | 133957913 | 134012860 | Sense/Antisense (SA) pairs |