AutismKB 2.0

Annotation Detail for TSPAN9


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Basic Information Top
Gene Symbol:TSPAN9 ( NET-5,NET5,PP1057 )
Gene Full Name: tetraspanin 9
Band: 12p13.33-p13.32
Quick LinksEntrez ID:10867; OMIM: 613137; Uniprot ID:TSN9_HUMAN; ENSEMBL ID: ENSG00000011105; HGNC ID: 21640
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
180N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
180N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
23S-palmitoylHMM predict
45Phosphoserine(CDC2)HMM predict
47O-linkedHMM predict
180N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_006675
  • Location:chr12 3056817-3265989
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 3052763 3053219 456 3827
CTCF CD4SISSRdata 3052763 3053219 456 3827
CTCF HelaGSE12889 3052902 3053201 299 3766
CTCF JurkatGSE12889 3052873 3053299 426 3732
Myc K562GSE19551 3052913 3053222 309 3750
PHF8 HeLaGSE20725 3055964 3057195 1231 238
RARG MCF7GSE15244 3039660 3039811 151 17082
Rb GrowingGSE19898 3052936 3053113 177 3793
Rb SenescentGSE19898 3052788 3053041 253 3903
hScc1 BcellGSE12603 3052944 3053209 265 3741
hScc1 BcellGSE12603 3056483 3056682 199 235
hScc1 CdLSGSE12603 3052944 3053375 431 3658
hScc1 G2GSE9613 3052944 3053449 505 3621
hScc1 G2GSE9613 3056103 3057120 1017 206
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 3268033 3268393 360 2224
NRSF pAbJurkat 3266440 3267118 678 790
NRSF pAbJurkat 3281581 3281820 239 15711
NRSF pAbJurkat 3282310 3282931 621 16631
NRSF pAbJurkat 3283413 3283992 579 17713
Oct1 H2O2-HelaGSE14283 3280861 3280893 32 14888
Oct1 HelaGSE14283 3280857 3280896 39 14887
Oct1 HelaGSE14283 3283985 3284031 46 18019
P300 T30-glioblastomaGSE21026 3279344 3280190 846 13778
c MYCMCF7 3282310 3282556 246 16444
hScc1 BcellGSE12603 3279183 3280396 1213 13800
hScc1 BcellGSE12603 3284625 3285001 376 18824
hScc1 CdLSGSE12603 3279147 3280697 1550 13933
hScc1 G2GSE9613 3279222 3280633 1411 13938
hScc1 G2GSE9613 3282310 3282472 162 16402
p63 keratinocytesGSE17611 3279002 3280104 1102 13564
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 3114948 3115279 331 0
CTCF CD4GSE12889 3182395 3182703 308 0
CTCF CD4GSE12889 3254920 3255193 273 0
CTCF CD4SISSRdata 3114948 3115279 331 0
CTCF CD4SISSRdata 3182395 3182703 308 0
CTCF CD4SISSRdata 3254920 3255193 273 0
CTCF HelaGSE12889 3254771 3255258 487 0
CTCF JurkatGSE12889 3114959 3115196 237 0
CTCF JurkatGSE12889 3254917 3255155 238 0
ER Fulvestrant-MCF7GSE14664 3163365 3163398 33 0
ER Fulvestrant-MCF7GSE14664 3169931 3169992 61 0
FOXA1 MCF7GSE15244 3109856 3110533 677 0
FOXA1 MCF7GSE15244 3186432 3186831 399 0
FOXA1 MCF7GSE15244 3194362 3195014 652 0
FOXA1 MCF7GSE15244 3213226 3213674 448 0
Fos K562GSE19551 3216271 3216773 502 0
Gata1 K562GSE18868 3076807 3077264 457 0
H3ac HepG2E 3191037 3191364 327 0
KLF4 hESGSE17917 3056737 3057006 269 0
KLF4 hESGSE17917 3148151 3148354 203 0
Myc K562GSE19551 3076890 3077229 339 0
NRSF pAbJurkat 3060258 3060417 159 0
NRSF pAbJurkat 3075432 3075738 306 0
NRSF pAbJurkat 3085600 3085876 276 0
NRSF pAbJurkat 3097016 3097390 374 0
NRSF pAbJurkat 3118208 3118560 352 0
NRSF pAbJurkat 3120062 3120364 302 0
NRSF pAbJurkat 3184779 3185304 525 0
NRSF pAbJurkat 3195447 3196196 749 0
NRSF pAbJurkat 3222473 3223085 612 0
NRSF pAbJurkat 3223499 3225172 1673 0
NRSF pAbJurkat 3229925 3230194 269 0
NRSF pAbJurkat 3235396 3235763 367 0
NRSF pAbJurkat 3243299 3244366 1067 0
NRSF pAbJurkat 3247721 3249233 1512 0
NRSF pAbJurkat 3259332 3259925 593 0
NRSF pAbJurkat 3262092 3262822 730 0
Oct1 H2O2-HelaGSE14283 3110004 3110076 72 0
Oct1 HelaGSE14283 3115723 3115751 28 0
RARG MCF7GSE15244 3082474 3082768 294 0
RARG MCF7GSE15244 3110000 3110533 533 0
RARG MCF7GSE15244 3186396 3186831 435 0
Rb shRbQuiescentGSE19898 3155459 3155694 235 0
Rb shRbQuiescentGSE19898 3165927 3166156 229 0
TAF HelaGSE8489 3062390 3063313 923 0
TFAP2C MCF7GSE21234 3076945 3077683 738 0
TFAP2C MCF7GSE21234 3102114 3102995 881 0
TFAP2C MCF7GSE21234 3110421 3111016 595 0
TFAP2C MCF7GSE21234 3170800 3171273 473 0
TFAP2C MCF7GSE21234 3193914 3195006 1092 0
TFAP2C MCF7GSE21234 3221506 3222066 560 0
hScc1 BcellGSE12603 3114828 3115584 756 0
hScc1 BcellGSE12603 3178953 3179259 306 0
hScc1 BcellGSE12603 3182224 3182845 621 0
hScc1 BcellGSE12603 3210745 3211005 260 0
hScc1 BcellGSE12603 3254747 3255819 1072 0
hScc1 CdLSGSE12603 3114828 3115374 546 0
hScc1 CdLSGSE12603 3182224 3182808 584 0
hScc1 CdLSGSE12603 3254558 3255471 913 0
hScc1 G2GSE9613 3114888 3115549 661 0
hScc1 G2GSE9613 3254770 3255471 701 0
p130 QuiescentGSE19898 3232053 3232273 220 0
p63 keratinocytesGSE17611 3196498 3198136 1638 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
5523 mRNA TSPAN9 chr12 3056817 3265990 351 EST chr12 3191017 3191368 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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