AutismKB 2.0

Annotation Detail for TRAFD1


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:TRAFD1 ( FLN29 )
Gene Full Name: TRAF-type zinc finger domain containing 1
Band: 12q24.13
Quick LinksEntrez ID:10906; OMIM: 613197; Uniprot ID:TRAD1_HUMAN; ENSEMBL ID: ENSG00000135148; HGNC ID: 24808
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylalanine.
323Phosphothreonine.
327Phosphoserine.
414Phosphothreonine.
415Phosphoserine.
470Phosphoserine.
Location(AA) Modifications Resource
327Phosphoserine.Swiss-Prot 53.0
327PhosphoserinePhospho.ELM 6.0
415Phosphoserine.Swiss-Prot 53.0
415PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
24N-linkedHMM predict
196N-linkedHMM predict
200N-linkedHMM predict
203N-linkedHMM predict
256Phosphoserine(IKK)HMM predict
280PhosphoserineHMM predict
313N-linkedHMM predict
327Phosphoserine(CDC2)HMM predict
409Phosphoserine(IKK)HMM predict
415Phosphoserine(IKK)HMM predict
433Phosphotyrosine(Syk)HMM predict
446O-linkedHMM predict
457N-linkedHMM predict
463N-linkedHMM predict
470Phosphoserine(CK1)HMM predict
470Phosphoserine(IKK)HMM predict
491Phosphoserine(IKK)HMM predict
491Phosphoserine(CK1)HMM predict
491Phosphoserine(ATM)HMM predict
528O-linkedHMM predict
530O-linkedHMM predict
530Phosphoserine(CDK)HMM predict
530Phosphoserine(CDC2)HMM predict
549Phosphoserine(PKG)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_006700
  • Location:chr12 111047763-111075794
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 111047000 111048025 1025 251
FoxA1 MCF7MACSdata 111039961 111040208 247 7679
NFkBII GM10847GSE19485 111047021 111048468 1447 19
Pol2 GM12878GSE19551 111047367 111048048 681 56
Rb SenescentGSE19898 111047457 111047765 308 153
TAFII hESGSE17917 111047446 111048001 555 40
p130 QuiescentGSE19898 111047619 111047895 276 7
p130 SenescentGSE19898 111047269 111047742 473 258
p130 shRbQuiescentGSE19898 111047412 111048025 613 45
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF HelaGSE12889 111092637 111092875 238 16962
CTCF G2GSE9613 111083955 111084290 335 8328
CTCF G2GSE9613 111085429 111086253 824 10047
CTCF G2GSE9613 111088420 111091055 2635 13943
CTCF G2GSE9613 111091482 111091952 470 15923
CTCF G2GSE9613 111092446 111093692 1246 17275
CTCF G2GSE9613 111094798 111095068 270 19139
NRSF pAbJurkat 111089660 111090679 1019 14375
hScc1 BcellGSE12603 111085659 111086516 857 10293
hScc1 G2GSE9613 111092094 111092947 853 16726
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 111047639 111048821 1182 0
ER E2-MCF7GSE14664 111049503 111049635 132 0
FOXA1 MCF7GSE15244 111059426 111059642 216 0
NFkBII GM12878GSE19485 111071276 111072824 1548 0
Oct1 H2O2-HelaGSE14283 111057127 111057155 28 0
Oct1 HelaGSE14283 111049503 111049540 37 0
Oct1 HelaGSE14283 111069797 111069834 37 0
PHF8 293TGSE20725 111047466 111048281 815 0
PHF8 HeLaGSE20725 111047377 111048413 1036 0
PHF8 Hs68plusFBSGSE20725 111047372 111048614 1242 0
RARA MCF7GSE15244 111059426 111059642 216 0
RARG MCF7GSE15244 111059426 111059642 216 0
Rb QuiescentGSE19898 111070617 111070775 158 0
Stat6 IL-4-hr4GSE17850 111071558 111072029 471 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved