AutismKB 2.0

Annotation Detail for CBX1


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Basic Information Top
Gene Symbol:CBX1 ( CBX,HP1-BETA,HP1Hs-beta,HP1Hsbeta,M31,MOD1,p25beta )
Gene Full Name: chromobox homolog 1
Band: 17q21.32
Quick LinksEntrez ID:10951; OMIM: 604511; Uniprot ID:CBX1_HUMAN; ENSEMBL ID: ENSG00000108468; HGNC ID: 1551
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
89Phosphoserine.
175Phosphoserine.
Location(AA) Modifications Resource
89Phosphoserine.Swiss-Prot 53.0
89PhosphoserinePhospho.ELM 6.0
175Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
21Phosphotyrosine(Syk)HMM predict
21Phosphotyrosine(Jak)HMM predict
21Phosphotyrosine(SRC)HMM predict
21Phosphotyrosine(INSR)HMM predict
70Phosphoserine(ATM)HMM predict
89Phosphoserine(CK2)HMM predict
89Phosphoserine(CK2)HMM predict
91Phosphoserine(CK1)HMM predict
107Phosphoserine(CK2)HMM predict
141PhosphoserineHMM predict
175Phosphoserine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_006807
  • Location:chr17 43502421-43533359
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 43533208 43533997 789 243
ETS1 JurkatGSE17954 43533150 43534133 983 282
PHF8 HeLaGSE20725 43533011 43534312 1301 302
Rb SenescentGSE19898 43532944 43533958 1014 92
hScc1 BcellGSE12603 43533141 43533997 856 210
hScc1 CdLSGSE12603 43533208 43533997 789 243
p130 shRbSenescentGSE19898 43533135 43533736 601 76
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 43506664 43507084 420 0
CTCF CD4GSE12889 43512656 43512828 172 0
CTCF CD4GSE12889 43530027 43530184 157 0
CTCF CD4SISSRdata 43506664 43507084 420 0
CTCF CD4SISSRdata 43512656 43512828 172 0
CTCF CD4SISSRdata 43530027 43530184 157 0
CTCF HelaGSE12889 43530055 43530187 132 0
CTCF G2GSE9613 43506707 43506895 188 0
H3K4me2 HCT116GSE10453 43531781 43532085 304 0
H3K4me2 HCT116GSE10453 43532527 43533175 648 0
H3K4me3 colorectalcancer 43532527 43533072 545 0
H3ac HepG2E 43532527 43533390 863 0
Oct1 H2O2-HelaGSE14283 43515799 43515846 47 0
Oct1 HelaGSE14283 43515791 43515846 55 0
RARA MCF7GSE15244 43518470 43518908 438 0
RARG MCF7GSE15244 43518470 43518880 410 0
TAF HelaGSE8489 43532527 43532908 381 0
TAF k562GSE8489 43532527 43533241 714 0
hScc1 BcellGSE12603 43506636 43507005 369 0
hScc1 CdLSGSE12603 43506310 43507299 989 0
hScc1 CdLSGSE12603 43512696 43512950 254 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
11311 EST chr17 43502480 43503051 571 mRNA CBX1 chr17 43502421 43533360Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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