Annotation Detail for SLC27A4

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Basic Information Top

Gene Symbol:	SLC27A4 ( ACSVL4,FATP4,IPS )
Gene Full Name:	solute carrier family 27 (fatty acid transporter), member 4
Band:	9q34.11
Quick Links	Entrez ID:10999; OMIM: 604194; Uniprot ID:S27A4_HUMAN; ENSEMBL ID: ENSG00000167114; HGNC ID: 10998
Relate to Another Database:	SFARIGene; denovo-db

General

Expression

Regulation

Pathways, Diseases and Drugs

PTM

TF binding site

miRNA targets

Cis-NATs

Post Translation Modification

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PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:7 results

No data

Location(AA)	Modification	Resource
75	Phosphothreonine(PKC)	HMM predict
111	Phosphoserine(CK1)	HMM predict
214	O-linked	HMM predict
327	N-linked	HMM predict
370	N-linked	HMM predict
515	N-linked	HMM predict
576	Phosphotyrosine(INSR)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_005094
Location:chr9 130142660-130163321
strand:+

Upstream the gene:4 results
Downstream the gene:7 results
Inside the gene:7 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ETS1	Jurkat	GSE17954	130141935	130143012	1077	187
FOXA1	MCF7	GSE15244	130141738	130142314	576	635
p130	Quiescent	GSE19898	130142300	130142501	201	260
p130	Senescent	GSE19898	130142247	130142577	330	249

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	130164226	130164522	296	1053
CTCF	CD4	SISSRdata	130164226	130164522	296	1053
CTCF	Hela	GSE12889	130164181	130164504	323	1021
H3ac	HepG2	E	130167885	130168074	189	4658
Myc	K562	GSE19551	130164129	130164620	491	1053
hScc1	Bcell	GSE12603	130163480	130164555	1075	696
hScc1	CdLS	GSE12603	130164211	130164661	450	1115

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	CD4	GSE12889	130143582	130143810	228
CTCF	CD4	SISSRdata	130143582	130143810	228
CTCF	Jurkat	GSE12889	130143428	130143774	346
hScc1	Bcell	GSE12603	130143324	130143814	490
hScc1	Bcell	GSE12603	130150530	130150788	258
hScc1	CdLS	GSE12603	130143286	130143814	528
hScc1	G2	GSE9613	130142513	130143814	1301

Validated miRNA targets

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miR Walk:92 results
Tarbase V5.0:0 results

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-let-7a	hsa-let-7a-1	9	19492978
hsa-let-7a	hsa-let-7a-2	11	19492978
hsa-let-7a	hsa-let-7a-3	22	19492978
hsa-let-7a	hsa-let-7a-1	9	19477633
hsa-let-7a	hsa-let-7a-2	11	19477633
hsa-let-7a	hsa-let-7a-3	22	19477633
hsa-let-7a*	hsa-let-7a-1	9	19492978
hsa-let-7a*	hsa-let-7a-3	22	19492978
hsa-let-7a*	hsa-let-7a-3	22	19477633
hsa-let-7a*	hsa-let-7a-1	9	19477633
hsa-let-7b	hsa-let-7b	22	19492978
hsa-let-7b	hsa-let-7b	22	19477633
hsa-let-7b*	hsa-let-7b	22	19492978
hsa-let-7b*	hsa-let-7b	22	19477633
hsa-let-7c	hsa-let-7c	21	19492978
hsa-let-7c	hsa-let-7c	21	19477633
hsa-let-7c*	hsa-let-7c	21	19492978
hsa-let-7c*	hsa-let-7c	21	19477633
hsa-let-7d	hsa-let-7d	9	19492978
hsa-let-7d	hsa-let-7d	9	19477633
hsa-let-7d*	hsa-let-7d	9	19492978
hsa-let-7d*	hsa-let-7d	9	19477633
hsa-let-7e	hsa-let-7e	19	19492978
hsa-let-7e	hsa-let-7e	19	19477633
hsa-let-7e*	hsa-let-7e	19	19492978
hsa-let-7e*	hsa-let-7e	19	19477633
hsa-let-7f	hsa-let-7f-1	9	19492978
hsa-let-7f	hsa-let-7f-2	X	19492978
hsa-let-7f	hsa-let-7f-1	9	19477633
hsa-let-7f	hsa-let-7f-2	X	19477633
hsa-let-7f-1*	hsa-let-7f-1	9	19492978
hsa-let-7f-1*	hsa-let-7f-1	9	19477633
hsa-let-7f-2*	hsa-let-7f-2	X	19492978
hsa-let-7f-2*	hsa-let-7f-2	X	19477633
hsa-let-7g	hsa-let-7g	3	19492978
hsa-let-7g	hsa-let-7g	3	19477633
hsa-let-7g*	hsa-let-7g	3	19492978
hsa-let-7g*	hsa-let-7g	3	19477633
hsa-let-7i	hsa-let-7i	12	19492978
hsa-let-7i	hsa-let-7i	12	19477633
hsa-let-7i*	hsa-let-7i	12	19492978
hsa-let-7i*	hsa-let-7i	12	19477633
hsa-miR-106b	hsa-mir-106b	7	21285944
hsa-miR-106b*	hsa-mir-106b	7	21285944
hsa-miR-135a	hsa-mir-135a-1	3	20634564
hsa-miR-135a	hsa-mir-135a-2	12	20634564
hsa-miR-17	hsa-mir-17	13	19492978
hsa-miR-17*	hsa-mir-17	13	19492978
hsa-miR-181a	hsa-mir-181a-2	9	20634564
hsa-miR-181a	hsa-mir-181a-1	1	20634564
hsa-miR-1912	hsa-mir-1912	X	19784364
hsa-miR-199b-3p	hsa-mir-199b	9	20634564
hsa-miR-199b-5p	hsa-mir-199b	9	20634564
hsa-miR-204	hsa-mir-204	9	20634564
hsa-miR-302a	hsa-mir-302a	4	19492978
hsa-miR-302a	hsa-mir-302a	4	20870751
hsa-miR-302a*	hsa-mir-302a	4	19492978
hsa-miR-302a*	hsa-mir-302a	4	20870751
hsa-miR-302b	hsa-mir-302b	4	19492978
hsa-miR-302b	hsa-mir-302b	4	20870751
hsa-miR-302b*	hsa-mir-302b	4	19492978
hsa-miR-302b*	hsa-mir-302b	4	20870751
hsa-miR-302c	hsa-mir-302c	4	19492978
hsa-miR-302c	hsa-mir-302c	4	20870751
hsa-miR-302c*	hsa-mir-302c	4	19492978
hsa-miR-302c*	hsa-mir-302c	4	20870751
hsa-miR-302d	hsa-mir-302d	4	19492978
hsa-miR-302d	hsa-mir-302d	4	20870751
hsa-miR-302d*	hsa-mir-302d	4	19492978
hsa-miR-302d*	hsa-mir-302d	4	20870751
hsa-miR-302f	hsa-mir-302f	0	19492978
hsa-miR-302f	hsa-mir-302f	0	20870751
hsa-miR-9	hsa-mir-9-1	1	20634564
hsa-miR-9	hsa-mir-9-2	5	20634564
hsa-miR-9	hsa-mir-9-3	15	20634564
hsa-miR-92a	hsa-mir-92a-1	13	19492978
hsa-miR-92a	hsa-mir-92a-2	X	19492978
hsa-miR-93	hsa-mir-93	7	21285944
hsa-miR-93*	hsa-mir-93	7	21285944
hsa-miR-941	hsa-mir-941-1	20	19784364
hsa-miR-941	hsa-mir-941-1	20	19784364
hsa-miR-941	hsa-mir-941-1	20	19784364
hsa-miR-941	hsa-mir-941-1	20	19784364
hsa-miR-941	hsa-mir-941-2	20	19784364
hsa-miR-941	hsa-mir-941-2	20	19784364
hsa-miR-941	hsa-mir-941-2	20	19784364
hsa-miR-941	hsa-mir-941-3	20	19784364
hsa-miR-941	hsa-mir-941-3	20	19784364
hsa-miR-941	hsa-mir-941-3	20	19784364
hsa-miR-941	hsa-mir-941-4	20	19784364
hsa-miR-941	hsa-mir-941-4	20	19784364
hsa-miR-941	hsa-mir-941-4	20	19784364

Cis-Nats regulation

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Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

AutismKB 2.0

Annotation Detail for SLC27A4

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics