AutismKB 2.0

Annotation Detail for KRR1


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Basic Information Top
Gene Symbol:KRR1 ( HRB2,RIP-1 )
Gene Full Name: KRR1, small subunit (SSU) processome component, homolog (yeast)
Band: 12q21.2
Quick LinksEntrez ID:11103; OMIM: 612817; Uniprot ID:KRR1_HUMAN; ENSEMBL ID: ENSG00000111615; HGNC ID: 5176
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylalanine.
3Phosphoserine.
5Phosphoserine.
336Phosphoserine.
337Phosphothreonine.
339Phosphothreonine.
Location(AA) Modifications Resource
2N-acetylalanine.Swiss-Prot 53.0
2PhosphoserinePhospho.ELM 6.0
3Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
46Phosphoserine(CK1)HMM predict
89N-linkedHMM predict
171Phosphothreonine(PKC)HMM predict
236Phosphoserine(CK1)HMM predict
236Phosphoserine(ATM)HMM predict
238Phosphoserine(PKA)HMM predict
261Phosphothreonine(PKC)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_007043
  • Location:chr12 74177687-74191684
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 74191220 74192404 1184 128
FOXA1 DLD1GSE12801 74208343 74208623 280 16799
Nanog hESGSE18292 74207077 74207528 451 15618
Oct1 HelaGSE14283 74207960 74208041 81 16316
P300 T0-glioblastomaGSE21026 74191426 74192038 612 48
Rb QuiescentGSE19898 74191440 74192002 562 37
Rb SenescentGSE19898 74191487 74192063 576 91
Rb shRbSenescenceGSE19898 74191574 74191995 421 100
Sox2 hESGSE18292 74207084 74207537 453 15626
TAFII hESGSE17917 74191548 74192047 499 113
p130 SenescentGSE19898 74191437 74192099 662 84
p130 shRbSenescentGSE19898 74191356 74192091 735 39
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 74180014 74180052 38 0
FOXA1 MCF7GSE15244 74191338 74191869 531 0
GABP HelaGSE8489 74190789 74192200 1411 0
GABP k562GSE8489 74190789 74192200 1411 0
GATA3 MCF7GSE15244 74190859 74191833 974 0
H3K4me2 HCT116GSE10453 74190789 74191305 516 0
H3K4me3 colorectalcancer 74190789 74191643 854 0
H3ac HepG2E 74190789 74191869 1080 0
P300 T30-glioblastomaGSE21026 74190731 74192266 1535 0
PHF8 293TGSE20725 74191226 74192001 775 0
RARA MCF7GSE15244 74190822 74191944 1122 0
RARG MCF7GSE15244 74191128 74191833 705 0
TAF HelaGSE8489 74190789 74192200 1411 0
TAF k562GSE8489 74190789 74192270 1481 0
hScc1 CdLSGSE12603 74185651 74186160 509 0
hScc1 G2GSE9613 74191408 74191692 284 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
6324 mRNA GLIPR1 chr12 74160800 74179158 315 mRNA HRB2 chr12 74177685 74191659Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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