AutismKB 2.0

Annotation Detail for PRDM4


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Basic Information Top
Gene Symbol:PRDM4 ( MGC45046,PFM1 )
Gene Full Name: PR domain containing 4
Band: 12q23.3
Quick LinksEntrez ID:11108; OMIM: 605780; Uniprot ID:PRDM4_HUMAN; ENSEMBL ID: ENSG00000110851; HGNC ID: 9348
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
11Phosphoserine(CDC2)HMM predict
21Phosphoserine(CDC2)HMM predict
24Phosphoserine(IKK)HMM predict
39Phosphoserine(CDC2)HMM predict
43O-linkedHMM predict
63Phosphoserine(CK1)HMM predict
89N-linkedHMM predict
143N-linkedHMM predict
181Phosphoserine(ATM)HMM predict
196N-linkedHMM predict
202Phosphoserine(CDC2)HMM predict
223PhosphoserineHMM predict
227N-linkedHMM predict
286Phosphoserine(CK1)HMM predict
347Phosphoserine(CK1)HMM predict
351Phosphoserine(IKK)HMM predict
364Phosphoserine(CK1)HMM predict
364Phosphoserine(IKK)HMM predict
400Phosphothreonine(MAPK)HMM predict
409Phosphoserine(PKG)HMM predict
579O-linkedHMM predict
601Phosphoserine(CDC2)HMM predict
601Phosphoserine(CDK)HMM predict
628Phosphoserine(CK1)HMM predict
651S-palmitoylHMM predict
707S-palmitoylHMM predict
730Phosphotyrosine(INSR)HMM predict
730Phosphotyrosine(Jak)HMM predict
730Phosphotyrosine(Jak)HMM predict
757O-linkedHMM predict
758O-linkedHMM predict
759Phosphoserine(CDC2)HMM predict
759Phosphoserine(CK2)HMM predict
760Phosphoserine(CK2)HMM predict
770Phosphoserine(CK2)HMM predict
770Phosphoserine(CK1)HMM predict
786IsoleucineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_012406
  • Location:chr12 106650773-106679043
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 106678628 106679677 1049 109
FOXA1 MCF7GSE15244 106682117 106682320 203 3175
FOXA1 MCF7GSE15244 106683077 106683402 325 4196
FoxA1 MCF7MACSdata 106682075 106682349 274 3169
Oct1 H2O2-HelaGSE14283 106683003 106683040 37 3978
Oct1 HelaGSE14283 106682989 106683041 52 3972
RARG MCF7GSE15244 106679700 106680081 381 847
TFAP2C MCF7GSE21234 106682505 106682945 440 3682
hScc1 CdLSGSE12603 106678618 106679625 1007 78
p130 shRbSenescentGSE19898 106679202 106679456 254 286
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 HelaGSE14283 106648544 106648620 76 2192
VDR GM10861-stimGSE22484 106648373 106652242 3869 466
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 106678452 106679324 872 0
ER E2-MCF7GSE14664 106674831 106674863 32 0
FOXA1 DLD1GSE12801 106663003 106663164 161 0
H3K4me3 colorectalcancer 106677421 106678414 993 0
H3ac HepG2E 106677455 106678486 1031 0
KLF4 hESGSE17917 106678554 106678969 415 0
PHF8 HeLaGSE20725 106678460 106679539 1079 0
PHF8 Hs68minusFBSGSE20725 106678150 106679514 1364 0
PHF8 Hs68plusFBSGSE20725 106677899 106679445 1546 0
RARA MCF7GSE15244 106677183 106678062 879 0
USF1 HepG2E 106677998 106678452 454 0
hScc1 BcellGSE12603 106678452 106679596 1144 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
6558 mRNA chr12 106632832 106656212 169 mRNA PRDM4 chr12 106629110 106657381Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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