AutismKB 2.0

Annotation Detail for FOXN3


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Basic Information Top
Gene Symbol:FOXN3 ( C14orf116,CHES1,PRO1635 )
Gene Full Name: forkhead box N3
Band: 14q31.3-q32.11
Quick LinksEntrez ID:1112; OMIM: 602628; Uniprot ID:FOXN3_HUMAN; ENSEMBL ID: ENSG00000053254; HGNC ID: 1928
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
85Phosphoserine.
Location(AA) Modifications Resource
85Phosphoserine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
14O-linkedHMM predict
23Phosphoserine(ATM)HMM predict
85Phosphoserine(IKK)HMM predict
94Phosphothreonine(CDC2)HMM predict
97PhosphoserineHMM predict
97Phosphoserine(CDC2)HMM predict
105Phosphotyrosine(Syk)HMM predict
130Phosphoserine(CDC2)HMM predict
165N-linkedHMM predict
169N-linkedHMM predict
180Phosphoserine(CK1)HMM predict
227O-linkedHMM predict
318Phosphoserine(IKK)HMM predict
321Phosphoserine(IKK)HMM predict
324Phosphoserine(CDK)HMM predict
324Phosphoserine(IKK)HMM predict
324Phosphoserine(CDC2)HMM predict
336N-linkedHMM predict
337Phosphotyrosine(SRC)HMM predict
337Phosphotyrosine(Syk)HMM predict
337Phosphotyrosine(INSR)HMM predict
343O-linkedHMM predict
347PhosphoserineHMM predict
349Phosphoserine(IKK)HMM predict
351O-linkedHMM predict
354O-linkedHMM predict
354Phosphoserine(IKK)HMM predict
360Phosphoserine(CK2)HMM predict
361Phosphoserine(CK2)HMM predict
366SulfotyrosineHMM predict
389Phosphoserine(IKK)HMM predict
389Phosphoserine(ATM)HMM predict
391Phosphoserine(CK1)HMM predict
393Phosphothreonine(CK2)HMM predict
401Phosphoserine(PKG)HMM predict
401Phosphoserine(ATM)HMM predict
414Phosphotyrosine(INSR)HMM predict
414Phosphotyrosine(Syk)HMM predict
416Phosphoserine(ATM)HMM predict
442Phosphothreonine(PKA)HMM predict
442Phosphothreonine(PKC)HMM predict
448Phosphoserine(ATM)HMM predict
448Phosphoserine(CK2)HMM predict
448PhosphoserineHMM predict
472N-linkedHMM predict
475N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_005197
  • Location:chr14 88692277-88953126
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 88961681 88962602 921 9015
CTCF G2GSE9613 88953920 88954137 217 902
H3ac HepG2E 88954137 88955271 1134 1578
P300 T30-glioblastomaGSE21026 88961535 88962542 1007 8912
RARA MCF7GSE15244 88958489 88959275 786 5756
RARA MCF7GSE15244 88965703 88966325 622 12888
RARG MCF7GSE15244 88954137 88954707 570 1296
RARG MCF7GSE15244 88958489 88959251 762 5744
RARG MCF7GSE15244 88965739 88966044 305 12765
TFAP2C MCF7GSE21234 88958846 88959367 521 5980
TFAP2C MCF7GSE21234 88964932 88965284 352 11982
hScc1 BcellGSE12603 88953888 88954928 1040 1282
hScc1 CdLSGSE12603 88953422 88954742 1320 956
hScc1 CdLSGSE12603 88966655 88967248 593 13825
p63 keratinocytesGSE17611 88964437 88965630 1193 11907
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 88673583 88674094 511 18439
Oct4 hESGSE21916 88675624 88676472 848 16230
P300 T30-glioblastomaGSE21026 88673523 88674192 669 18420
RARA MCF7GSE15244 88682154 88682541 387 9930
RARG MCF7GSE15244 88682154 88682506 352 9948
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 88928607 88930682 2075 0
CTCF CD4GSE12889 88713535 88713901 366 0
CTCF CD4SISSRdata 88713535 88713901 366 0
CTCF JurkatGSE12889 88713562 88713799 237 0
CTCF G2GSE9613 88948637 88948969 332 0
ER MCF7GSE19013 88750008 88750843 835 0
ER MCF7E 88733063 88733297 234 0
FOXA1 MCF7GSE15244 88711592 88712963 1371 0
FOXA1 MCF7GSE15244 88750093 88750988 895 0
Fos K562GSE19551 88952023 88952590 567 0
FoxA1 MCF7MACSdata 88712164 88712648 484 0
FoxA1 MCF7MACSdata 88750210 88750868 658 0
FoxA1 MCF7MACSdata 88887741 88888088 347 0
Gata2 K562GSE18868 88701363 88701939 576 0
H3ac HepG2E 88889208 88889739 531 0
H3ac HepG2E 88946315 88946651 336 0
H3ac HepG2E 88950951 88952201 1250 0
NFkBII GM10847GSE19485 88811921 88813862 1941 0
NFkBII GM12878GSE19485 88811842 88813452 1610 0
NFkBII GM12892GSE19485 88812287 88813475 1188 0
NFkBII GM15510GSE19485 88812270 88813630 1360 0
NFkBII GM18505GSE19485 88812054 88813548 1494 0
NFkBII GM18526GSE19485 88811906 88813432 1526 0
NRSF-mono JurkatQuESTdata 88860862 88861311 449 0
Nanog hESGSE18292 88832224 88832685 461 0
Nanog hESGSE18292 88887350 88887732 382 0
Oct1 H2O2-HelaGSE14283 88860327 88860362 35 0
Oct1 H2O2-HelaGSE14283 88940859 88940886 27 0
Oct1 HelaGSE14283 88860330 88860362 32 0
Oct1 HelaGSE14283 88940859 88940903 44 0
Oct1 HelaGSE14283 88945656 88945687 31 0
Oct4 hESGSE21916 88829080 88830536 1456 0
Oct4 hESGSE21916 88887255 88887987 732 0
RARA MCF7GSE15244 88750057 88751065 1008 0
RARA MCF7GSE15244 88751618 88752333 715 0
RARA MCF7GSE15244 88864184 88864803 619 0
RARA MCF7GSE15244 88951650 88952268 618 0
RARG MCF7GSE15244 88750093 88751023 930 0
Rb GrowingGSE19898 88747918 88748112 194 0
Rb GrowingGSE19898 88840263 88840574 311 0
Rb QuiescentGSE19898 88840340 88840587 247 0
Rb SenescentGSE19898 88840196 88840620 424 0
Sox2 hESGSE18292 88832100 88832710 610 0
Stat6 IL-4-hr4GSE17850 88845577 88846229 652 0
TFAP2C MCF7GSE21234 88727280 88727592 312 0
USF2 HepG2E 88887454 88888537 1083 0
hScc1 BcellGSE12603 88701152 88701437 285 0
hScc1 BcellGSE12603 88736616 88736757 141 0
hScc1 BcellGSE12603 88737662 88737851 189 0
hScc1 BcellGSE12603 88804648 88804921 273 0
hScc1 BcellGSE12603 88844407 88844933 526 0
hScc1 BcellGSE12603 88864431 88864684 253 0
hScc1 BcellGSE12603 88921919 88922172 253 0
hScc1 BcellGSE12603 88924957 88925179 222 0
hScc1 BcellGSE12603 88951888 88952300 412 0
hScc1 CdLSGSE12603 88921919 88922205 286 0
hScc1 CdLSGSE12603 88951855 88953047 1192 0
p130 QuiescentGSE19898 88839714 88839935 221 0
p130 QuiescentGSE19898 88840174 88840586 412 0
p130 QuiescentGSE19898 88935310 88936289 979 0
p130 SenescentGSE19898 88840031 88840265 234 0
p130 SenescentGSE19898 88935918 88936425 507 0
p130 shRbQuiescentGSE19898 88935392 88935857 465 0
p130 shRbSenescentGSE19898 88840185 88840671 486 0
p130 shRbSenescentGSE19898 88840701 88840874 173 0
p63 keratinocytesGSE17611 88781836 88782432 596 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
8240 HTC CHES1 chr14 88692746 88694035 1289 mRNA CHES1 chr14 88692277 88953127Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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