AutismKB 2.0

Annotation Detail for FAF1


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:FAF1 ( FLJ37524,HFAF1s,UBXD12,UBXN3A,hFAF1 )
Gene Full Name: Fas (TNFRSF6) associated factor 1
Band: 1p32.3
Quick LinksEntrez ID:11124; OMIM: 604460; Uniprot ID:FAF1_HUMAN; ENSEMBL ID: ENSG00000185104; HGNC ID: 3578
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
225Phosphotyrosine.
270Phosphoserine (By similarity).
320Phosphoserine.
580Phosphothreonine (By similarity).
582Phosphoserine.
Location(AA) Modifications Resource
225Phosphotyrosine.Swiss-Prot 53.0
289Phosphoserine (CK2
291Phosphoserine (CK2
Location(AA) Modification Resource
70O-linkedHMM predict
77O-linkedHMM predict
77O-linkedHMM predict
78Phosphoserine(IKK)HMM predict
79Phosphoserine(CK1)HMM predict
79O-linkedHMM predict
178O-linkedHMM predict
179Phosphoserine(CDK)HMM predict
180Phosphoserine(CDK)HMM predict
181O-linkedHMM predict
210N-linkedHMM predict
270Phosphoserine(CDC2)HMM predict
270Phosphoserine(CAMK2)HMM predict
270Phosphoserine(IKK)HMM predict
270Phosphoserine(PKB)HMM predict
274Phosphothreonine(PKC)HMM predict
291Phosphoserine(ATM)HMM predict
366Phosphotyrosine(EGFR)HMM predict
470N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_007051
  • Location:chr1 50679522-51198523
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 51197975 51199124 1149 26
H3ac HepG2E 51199611 51199824 213 1194
Oct4 hESGSE17917 51198454 51198817 363 112
Rb QuiescentGSE19898 51198230 51198821 591 2
TAF k562GSE8489 51198737 51199171 434 431
USF1 HepG2E 51198561 51199247 686 381
USF1 HepG2E 51199611 51199860 249 1212
USF2 HepG2E 51198561 51199247 686 381
USF2 HepG2E 51199611 51199824 213 1194
p130 QuiescentGSE19898 51198497 51198814 317 132
p130 SenescentGSE19898 51198320 51198834 514 54
p130 shRbSenescentGSE19898 51198503 51198812 309 134
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 50661078 50661591 513 18188
CTCF G2GSE9613 50663652 50664263 611 15565
CTCF G2GSE9613 50666066 50666300 234 13340
H3K27me3 colorectalcancer 50659923 50660788 865 19167
H3K27me3 colorectalcancer 50662400 50663032 632 16807
H3K27me3 colorectalcancer 50663677 50665782 2105 14793
H3K27me3 colorectalcancer 50666157 50667075 918 12907
hScc1 BcellGSE12603 50661078 50661675 597 18146
hScc1 BcellGSE12603 50665711 50666066 355 13634
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 51013074 51013309 235 0
CTCF CD4GSE12889 51167650 51168023 373 0
CTCF CD4SISSRdata 51013074 51013309 235 0
CTCF CD4SISSRdata 51167650 51168023 373 0
CTCF G2GSE9613 50827520 50827734 214 0
CTCF G2GSE9613 51197956 51198918 962 0
Fos K562GSE19551 51169526 51170104 578 0
FoxA1 MCF7MACSdata 51188748 51188985 237 0
H3K4me2 HCT116GSE10453 51196984 51198004 1020 0
H3K4me3 colorectalcancer 51196984 51197956 972 0
H3ac HepG2E 51197020 51197924 904 0
Nanog ESGSE20650 50938075 50939104 1029 0
Nanog hESGSE18292 50957045 50957551 506 0
Nanog hESGSE18292 51031874 51032126 252 0
Oct1 H2O2-HelaGSE14283 50687141 50687181 40 0
Oct1 H2O2-HelaGSE14283 50850466 50850494 28 0
Oct1 H2O2-HelaGSE14283 50864301 50864334 33 0
Oct1 H2O2-HelaGSE14283 51123975 51124015 40 0
Oct1 H2O2-HelaGSE14283 51141331 51141367 36 0
Oct1 HelaGSE14283 50687112 50687180 68 0
Oct1 HelaGSE14283 50697434 50697489 55 0
Oct1 HelaGSE14283 50763364 50763396 32 0
Oct1 HelaGSE14283 50864301 50864332 31 0
Oct1 HelaGSE14283 50883194 50883222 28 0
Oct1 HelaGSE14283 51022282 51022321 39 0
Oct1 HelaGSE14283 51123975 51124015 40 0
Oct1 HelaGSE14283 51141331 51141391 60 0
Oct4 hESGSE17917 50938389 50938774 385 0
PHF8 HeLaGSE20725 51197736 51199109 1373 0
RARA MCF7GSE15244 50841941 50842416 475 0
Rb GrowingGSE19898 50827542 50827777 235 0
Rb GrowingGSE19898 51198184 51198301 117 0
Rb SenescentGSE19898 51198085 51198430 345 0
Rb shRbQuiescentGSE19898 51198210 51198474 264 0
TAF HelaGSE8489 51196984 51198004 1020 0
TAF k562GSE8489 51196984 51198041 1057 0
USF1 HepG2E 51197020 51197924 904 0
USF2 HepG2E 51015701 51015971 270 0
hScc1 BcellGSE12603 51084579 51084783 204 0
hScc1 BcellGSE12603 51197956 51198918 962 0
hScc1 CdLSGSE12603 50942265 50942744 479 0
hScc1 CdLSGSE12603 50973601 50973939 338 0
hScc1 CdLSGSE12603 51012845 51013607 762 0
p130 QuiescentGSE19898 51198246 51198442 196 0
p63 keratinocytesGSE17611 50841504 50842563 1059 0
p63 keratinocytesGSE17611 50943849 50944653 804 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-146a hsa-mir-146a 5 20459811
hsa-miR-146a* hsa-mir-146a 5 20459811
hsa-miR-24 hsa-mir-24-1 9 20195546
hsa-miR-24 hsa-mir-24-2 19 20195546
hsa-miR-24-1* hsa-mir-24-1 9 20195546
hsa-miR-24-2* hsa-mir-24-2 19 20195546
hsa-miR-363 hsa-mir-363 X 20459811
hsa-miR-363* hsa-mir-363 X 20459811
hsa-miR-498 hsa-mir-498 19 20459811
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
774 EST chr1 50639151 50648843 9692 mRNA FAF1 chr1 50618955 51137957 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved