Annotation Detail for CHGA
Basic Information Top
| Gene Symbol: | CHGA ( CGA ) |
|---|---|
| Gene Full Name: | chromogranin A (parathyroid secretory protein 1) |
| Band: | 14q32.12 |
| Quick Links | Entrez ID:1113; OMIM: 118910; Uniprot ID:CMGA_HUMAN; ENSEMBL ID: ENSG00000100604; HGNC ID: 1929 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 112 | Phosphoserine. | |
| 113 | Phosphoserine. | |
| 136 | Phosphoserine. | |
| 142 | Phosphoserine. | |
| 181 | O-linked (GalNAc...). | |
| 183 | O-linked (GalNAc...). | |
| 203 | Phosphoserine. | |
| 218 | Phosphoserine. | |
| 251 | O-linked (GalNAc...). | |
| 270 | Phosphoserine. | |
| 300 | Phosphoserine. | |
| 319 | Glycine amide. | |
| 322 | Phosphoserine. | |
| 333 | Phosphoserine. | |
| 402 | Phosphoserine. | |
| 456 | Arginine amide. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 0 | T | OGlycBase6.0 |
| 0 | T | OGlycBase6.0 |
| 0 | T | OGlycBase6.0 |
| 112 | Phosphoserine. | Swiss-Prot 53.0 |
| 113 | Phosphoserine. | Swiss-Prot 53.0 |
| 136 | Phosphoserine. | Swiss-Prot 53.0 |
| 142 | Phosphoserine. | Swiss-Prot 53.0 |
| 181 | O-linked (GalNAc...)./FTId=CAR | |
| 183 | O-linked (GalNAc...)./FTId=CAR | |
| 203 | Phosphoserine. | Swiss-Prot 53.0 |
| 218 | Phosphoserine | Phospho.ELM 6.0 |
| 218 | Phosphoserine. | Swiss-Prot 53.0 |
| 251 | O-linked (GalNAc...)./FTId=CAR | |
| 270 | Phosphoserine. | Swiss-Prot 53.0 |
| 300 | Phosphoserine. | Swiss-Prot 53.0 |
| 319 | Glycine amide (G-320 provides amidegroup). | Swiss-Prot 53.0 |
| 322 | Phosphoserine | Phospho.ELM 6.0 |
| 322 | Phosphoserine. | Swiss-Prot 53.0 |
| 333 | Phosphoserine | Phospho.ELM 6.0 |
| 333 | Phosphoserine. | Swiss-Prot 53.0 |
| 402 | Phosphoserine. | Swiss-Prot 53.0 |
| 456 | Arginine amide (G-457 provides amidegroup). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 45 | Phosphoserine(CK1) | HMM predict |
| 45 | Phosphoserine(IKK) | HMM predict |
| 48 | O-linked | HMM predict |
| 68 | Phosphoserine(CK1) | HMM predict |
| 105 | Phosphoserine(CK2) | HMM predict |
| 105 | Phosphoserine(CK1) | HMM predict |
| 110 | N-linked | HMM predict |
| 113 | Phosphoserine(ATM) | HMM predict |
| 113 | Phosphoserine(CK2) | HMM predict |
| 125 | Phosphoserine(CK1) | HMM predict |
| 136 | Phosphoserine | HMM predict |
| 136 | Phosphoserine(CK1) | HMM predict |
| 136 | Phosphoserine(CK2) | HMM predict |
| 161 | Phosphoserine(PKG) | HMM predict |
| 191 | Phosphoserine(ATM) | HMM predict |
| 300 | Phosphoserine(ATM) | HMM predict |
| 322 | Phosphoserine | HMM predict |
| 333 | Phosphoserine(CK1) | HMM predict |
| 392 | Methylarginine | HMM predict |
| 402 | Phosphoserine(CK1) | HMM predict |
| 436 | Phosphoserine(CK1) | HMM predict |
- RefSeq ID: NM_001275
- Location:chr14 92459244-92471388
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 92455463 | 92455662 | 199 | 3682 |
| FOXA1 | MCF7 | GSE15244 | 92452558 | 92453974 | 1416 | 5979 |
| NRSF | Jurkat | GSE13047 | 92449639 | 92450871 | 1232 | 8990 |
| NRSF | Jurkat | GSE13047 | 92450886 | 92452918 | 2032 | 7343 |
| NRSF | mAb | Jurkat | 92441163 | 92441684 | 521 | 17821 |
| NRSF | mAb | Jurkat | 92448874 | 92449549 | 675 | 10033 |
| NRSF | mAb | Jurkat | 92450027 | 92450672 | 645 | 8895 |
| NRSF | mAb | Jurkat | 92451028 | 92454813 | 3785 | 6324 |
| NRSF | mAb | Jurkat | 92455203 | 92457216 | 2013 | 3035 |
| NRSF | mAb | Jurkat | 92457799 | 92458901 | 1102 | 895 |
| NRSF-mono | Jurkat | QuESTdata | 92448865 | 92449443 | 578 | 10091 |
| NRSF-mono | Jurkat | QuESTdata | 92449781 | 92450734 | 953 | 8987 |
| NRSF-mono | Jurkat | QuESTdata | 92450964 | 92451559 | 595 | 7983 |
| NRSF-mono | Jurkat | QuESTdata | 92451565 | 92452672 | 1107 | 7126 |
| NRSF-mono | Jurkat | QuESTdata | 92457855 | 92458337 | 482 | 1149 |
| NRSF-poly | Jurkat | QuESTdata | 92448855 | 92449349 | 494 | 10143 |
| NRSF-poly | Jurkat | QuESTdata | 92449629 | 92450854 | 1225 | 9003 |
| NRSF-poly | Jurkat | QuESTdata | 92450933 | 92453481 | 2548 | 7038 |
| NRSF-poly | Jurkat | QuESTdata | 92454550 | 92455868 | 1318 | 4036 |
| RARA | MCF7 | GSE15244 | 92452418 | 92453038 | 620 | 6517 |
| RARA | MCF7 | GSE15244 | 92453340 | 92453865 | 525 | 5642 |
| RARA | MCF7 | GSE15244 | 92455705 | 92456518 | 813 | 3133 |
| RARG | MCF7 | GSE15244 | 92452530 | 92453865 | 1335 | 6047 |
| RARG | MCF7 | GSE15244 | 92455627 | 92456518 | 891 | 3172 |
| TFAP2C | MCF7 | GSE21234 | 92453209 | 92454120 | 911 | 5580 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 92472206 | 92472670 | 464 | 1050 |
| RARA | MCF7 | GSE15244 | 92472903 | 92473853 | 950 | 1990 |
| TFAP2C | MCF7 | GSE21234 | 92472074 | 92472616 | 542 | 957 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 92459246 | 92459680 | 434 | 0 |
| CTCF | G2 | GSE9613 | 92465161 | 92465426 | 265 | 0 |
| CTCF | G2 | GSE9613 | 92467269 | 92467768 | 499 | 0 |
| CTCF | G2 | GSE9613 | 92468375 | 92468796 | 421 | 0 |
| CTCF | G2 | GSE9613 | 92470422 | 92471100 | 678 | 0 |
| NRSF | Jurkat | GSE13047 | 92457801 | 92461030 | 3229 | 0 |
| NRSF | mAb | Jurkat | 92459680 | 92464074 | 4394 | 0 |
| NRSF-mono | Jurkat | QuESTdata | 92458361 | 92461011 | 2650 | 0 |
| NRSF-poly | Jurkat | QuESTdata | 92457801 | 92462327 | 4526 | 0 |
| RARA | MCF7 | GSE15244 | 92462647 | 92463832 | 1185 | 0 |
| RARG | MCF7 | GSE15244 | 92462046 | 92463760 | 1714 | 0 |
| hScc1 | Bcell | GSE12603 | 92459210 | 92459762 | 552 | 0 |
| hScc1 | Bcell | GSE12603 | 92464074 | 92464403 | 329 | 0 |
| hScc1 | Bcell | GSE12603 | 92467269 | 92467643 | 374 | 0 |
| p63 | keratinocytes | GSE17611 | 92461743 | 92463300 | 1557 | 0 |
Validated miRNA targets