AutismKB 2.0

Annotation Detail for LDB3


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Basic Information Top
Gene Symbol:LDB3 ( CMD1C,CYPHER,FLJ35865,KIAA01613,KIAA0613,LDB3Z1,LDB3Z4,LVNC3,ORACLE,PDLIM6,ZASP )
Gene Full Name: LIM domain binding 3
Band: 10q23.2
Quick LinksEntrez ID:11155; OMIM: 605906; Uniprot ID:LDB3_HUMAN; ENSEMBL ID: ENSG00000122367; HGNC ID: 15710
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
41Phosphoserine(IKK)HMM predict
44Phosphoserine(ATM)HMM predict
90O-linkedHMM predict
91O-linkedHMM predict
91O-linkedHMM predict
92O-linkedHMM predict
98O-linkedHMM predict
98Phosphothreonine(MAPK)HMM predict
114N-linkedHMM predict
121O-linkedHMM predict
121Phosphoserine(CDC2)HMM predict
121Phosphoserine(CDK)HMM predict
123Phosphoserine(CDC2)HMM predict
129O-linkedHMM predict
129Phosphoserine(CDC2)HMM predict
135Phosphothreonine(CDC2)HMM predict
135Phosphothreonine(MAPK)HMM predict
135Phosphothreonine(CDK)HMM predict
143Phosphoserine(CDC2)HMM predict
159O-linkedHMM predict
173Phosphoserine(CDC2)HMM predict
184O-linkedHMM predict
190Phosphoserine(ATM)HMM predict
243Phosphoserine(MAPK)HMM predict
268Phosphoserine(IKK)HMM predict
298Phosphoserine(PKA)HMM predict
299Phosphoserine(PKB)HMM predict
299PhosphoserineHMM predict
309O-linkedHMM predict
310Phosphoserine(IKK)HMM predict
313O-linkedHMM predict
320O-linkedHMM predict
328Phosphoserine(CDC2)HMM predict
330O-linkedHMM predict
330Phosphoserine(IKK)HMM predict
333O-linkedHMM predict
338O-linkedHMM predict
343O-linkedHMM predict
347O-linkedHMM predict
349O-linkedHMM predict
350O-linkedHMM predict
351O-linkedHMM predict
356O-linkedHMM predict
356Phosphoserine(CDC2)HMM predict
360Phosphoserine(CDC2)HMM predict
360Phosphoserine(CDK)HMM predict
360PhosphoserineHMM predict
366O-linkedHMM predict
369O-linkedHMM predict
375O-linkedHMM predict
376O-linkedHMM predict
382O-linkedHMM predict
385O-linkedHMM predict
399Phosphothreonine(PKC)HMM predict
408Phosphotyrosine(EGFR)HMM predict
408Phosphotyrosine(SRC)HMM predict
408Phosphotyrosine(Syk)HMM predict
415O-linkedHMM predict
415O-linkedHMM predict
415O-linkedHMM predict
417O-linkedHMM predict
419Phosphoserine(CDC2)HMM predict
419Phosphoserine(ATM)HMM predict
423N-linkedHMM predict
425O-linkedHMM predict
427O-linkedHMM predict
430O-linkedHMM predict
430Phosphothreonine(MAPK)HMM predict
430Phosphothreonine(CDK)HMM predict
432O-linkedHMM predict
432Phosphoserine(CDC2)HMM predict
438O-linkedHMM predict
438O-linkedHMM predict
438Phosphothreonine(MAPK)HMM predict
440O-linkedHMM predict
440Phosphoserine(CDC2)HMM predict
440Phosphoserine(CDK)HMM predict
446O-linkedHMM predict
446O-linkedHMM predict
446Phosphothreonine(MAPK)HMM predict
448O-linkedHMM predict
448Phosphoserine(CDC2)HMM predict
448Phosphoserine(CDK)HMM predict
452O-linkedHMM predict
452O-linkedHMM predict
454O-linkedHMM predict
454O-linkedHMM predict
454Phosphothreonine(MAPK)HMM predict
456O-linkedHMM predict
456Phosphoserine(CDC2)HMM predict
456Phosphoserine(CDK)HMM predict
462O-linkedHMM predict
462O-linkedHMM predict
462Phosphothreonine(MAPK)HMM predict
464Phosphoserine(CDC2)HMM predict
464Phosphoserine(CDK)HMM predict
478O-linkedHMM predict
486O-linkedHMM predict
507O-linkedHMM predict
508Phosphoserine(IKK)HMM predict
521Phosphotyrosine(INSR)HMM predict
551S-palmitoylHMM predict
610S-palmitoylHMM predict
636S-palmitoylHMM predict
700S-palmitoylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_007078
  • Location:chr10 88418407-88484730
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 88417936 88418513 577 183
Oct1 HelaGSE14283 88417433 88417460 27 961
P300 T30-glioblastomaGSE21026 88417809 88418579 770 214
TFAP2C MCF7GSE21234 88417832 88418441 609 271
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 HelaGSE14283 88487011 88487041 30 2296
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 88438090 88438390 300 0
CTCF CD4GSE12889 88443652 88443864 212 0
CTCF CD4GSE12889 88460820 88461107 287 0
CTCF CD4SISSRdata 88438090 88438390 300 0
CTCF CD4SISSRdata 88443652 88443864 212 0
CTCF CD4SISSRdata 88460820 88461107 287 0
CTCF HelaGSE12889 88460880 88461050 170 0
ER E2-MCF7GSE14664 88454786 88454865 79 0
ER MCF7GSE19013 88432256 88433107 851 0
ER MCF7GSE19013 88465330 88465998 668 0
Oct1 HelaGSE14283 88481948 88481979 31 0
P300 T30-glioblastomaGSE21026 88437421 88437900 479 0
PHF8 HeLaGSE20725 88460486 88461667 1181 0
Rb shRbSenescenceGSE19898 88444711 88444905 194 0
STAT1 IFNSISSRdata 88479731 88480582 851 0
Sox2 hESGSE18292 88438507 88438692 185 0
TFAP2C MCF7GSE21234 88430572 88431195 623 0
TFAP2C MCF7GSE21234 88438092 88438394 302 0
TFAP2C MCF7GSE21234 88465321 88465809 488 0
hScc1 BcellGSE12603 88418504 88418945 441 0
hScc1 BcellGSE12603 88428973 88429327 354 0
hScc1 BcellGSE12603 88438133 88438885 752 0
hScc1 BcellGSE12603 88443467 88443863 396 0
hScc1 BcellGSE12603 88448097 88448905 808 0
hScc1 BcellGSE12603 88459552 88459701 149 0
hScc1 BcellGSE12603 88466304 88466508 204 0
hScc1 CdLSGSE12603 88437985 88438839 854 0
hScc1 CdLSGSE12603 88443467 88443939 472 0
hScc1 CdLSGSE12603 88460550 88461651 1101 0
hScc1 G2GSE9613 88443401 88443760 359 0
p130 QuiescentGSE19898 88461813 88461994 181 0
p130 QuiescentGSE19898 88461997 88462135 138 0
p130 SenescentGSE19898 88460521 88461122 601 0
p130 shRbQuiescentGSE19898 88460560 88461094 534 0
p130 shRbSenescentGSE19898 88460584 88461124 540 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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