Annotation Detail for CHI3L2

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Basic Information Top

Gene Symbol:	CHI3L2 ( YKL-39,YKL39 )
Gene Full Name:	chitinase 3-like 2
Band:	1p13.2
Quick Links	Entrez ID:1117; OMIM: 601526; Uniprot ID:CH3L2_HUMAN; ENSEMBL ID: ENSG00000064886; HGNC ID: 1933
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:1 results
Predicted PTM Sites by profile HMM from dbPTM:7 results

Location(AA)	Modification
35	N-linked (GlcNAc...) (Potential).

Location(AA)	Modification	Resource
195	Phosphotyrosine(Jak)	HMM predict
228	Phosphoserine(CDK)	HMM predict
242	Phosphotyrosine(Syk)	HMM predict
243	Phosphotyrosine(Syk)	HMM predict
280	O-linked	HMM predict
287	O-linked	HMM predict
372	S-farnesyl	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_001025197
Location:chr1 111571803-111587582
strand:+

Upstream the gene:12 results
Downstream the gene:0 results
Inside the gene:4 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	111567091	111567323	232	4597
CTCF	CD4	SISSRdata	111567091	111567323	232	4597
CTCF	Hela	GSE12889	111567038	111567367	329	4601
CTCF	G2	GSE9613	111566869	111567514	645	4612
NRSF	mAb	Jurkat	111559801	111561353	1552	11227
Oct1	Hela	GSE14283	111559938	111559967	29	11851
hScc1	Bcell	GSE12603	111564325	111564684	359	7299
hScc1	Bcell	GSE12603	111565913	111567698	1785	4998
hScc1	CdLS	GSE12603	111559801	111560814	1013	11496
hScc1	CdLS	GSE12603	111564009	111564647	638	7476
hScc1	CdLS	GSE12603	111565736	111567909	2173	4981
hScc1	G2	GSE9613	111566869	111567589	720	4575

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
RARA	MCF7	GSE15244	111571706	111573125	1419	0
Rb	Senescent	GSE19898	111572603	111572939	336	0
TFAP2C	MCF7	GSE21234	111572405	111572971	566	0
p130	shRbSenescent	GSE19898	111572891	111573011	120	0

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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