AutismKB 2.0

Annotation Detail for DDX20


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Basic Information Top
Gene Symbol:DDX20 ( DKFZp434H052,DP103,GEMIN3 )
Gene Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
Band: 1p13.2
Quick LinksEntrez ID:11218; OMIM: 606168; Uniprot ID:DDX20_HUMAN; ENSEMBL ID: ENSG00000064703; HGNC ID: 2743
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
48Phosphoserine.
90Q motif.
187Phosphoserine.
214DEAD box.
500Phosphoserine.
532Phosphoserine.
552Phosphothreonine.
649Phosphoserine.
652Phosphoserine.
654Phosphoserine.
656Phosphoserine.
672Phosphoserine.
677Phosphoserine.
678Phosphoserine.
703Phosphoserine.
705Phosphothreonine.
714Phosphoserine.
Location(AA) Modifications Resource
500Phosphoserine.Swiss-Prot 53.0
677PhosphoserinePhospho.ELM 6.0
678PhosphoserinePhospho.ELM 6.0
705Phosphothreonine.Swiss-Prot 53.0
705PhosphothreoninePhospho.ELM 6.0
714Phosphoserine.Swiss-Prot 53.0
714PhosphoserinePhospho.ELM 6.0
743PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
33O-linkedHMM predict
33Phosphothreonine(MAPK)HMM predict
33O-linkedHMM predict
48Phosphoserine(CDK)HMM predict
53Phosphothreonine(PKA)HMM predict
172Phosphoserine(ATM)HMM predict
221Phosphoserine(CK2)HMM predict
246Phosphotyrosine(EGFR)HMM predict
267N-linkedHMM predict
280Phosphotyrosine(Syk)HMM predict
498N-linkedHMM predict
499N-linkedHMM predict
500Phosphoserine(CK1)HMM predict
500PhosphoserineHMM predict
510N-linkedHMM predict
511N-linkedHMM predict
522Phosphoserine(CK2)HMM predict
532Phosphoserine(CDC2)HMM predict
532Phosphoserine(MAPK)HMM predict
549Phosphoserine(PKG)HMM predict
552Phosphothreonine(CDK)HMM predict
556N-linkedHMM predict
557Phosphoserine(IKK)HMM predict
559N-linkedHMM predict
577S-palmitoylHMM predict
598SulfotyrosineHMM predict
647Phosphoserine(ATM)HMM predict
649Phosphoserine(CK2)HMM predict
654Phosphoserine(ATM)HMM predict
656Phosphoserine(ATM)HMM predict
660Phosphoserine(CK1)HMM predict
664Phosphoserine(CK2)HMM predict
665Phosphoserine(IKK)HMM predict
665Phosphoserine(ATM)HMM predict
695Phosphoserine(CK1)HMM predict
701N-linkedHMM predict
703O-linkedHMM predict
705Phosphothreonine(CDC2)HMM predict
705Phosphothreonine(MAPK)HMM predict
707N-linkedHMM predict
711Phosphotyrosine(EGFR)HMM predict
728Phosphoserine(ATM)HMM predict
743Phosphoserine(PKB)HMM predict
756Phosphotyrosine(Jak)HMM predict
765Phosphoserine(PKA)HMM predict
770Phosphotyrosine(Syk)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_007204
  • Location:chr1 112099776-112111720
  • strand:+
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 112113728 112114108 380 2198
CTCF CD4SISSRdata 112113728 112114108 380 2198
CTCF G2GSE9613 112113883 112114065 182 2254
hScc1 BcellGSE12603 112113668 112114065 397 2146
hScc1 CdLSGSE12603 112113467 112114065 598 2046
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K4me3 colorectalcancer 112100371 112101018 647 0
H3ac HepG2E 112100575 112101170 595 0
H3ac HepG2E 112101495 112101984 489 0
PHF8 HeLaGSE20725 112099154 112100489 1335 0
PHF8 Hs68plusFBSGSE20725 112098997 112100683 1686 0
RARA MCF7GSE15244 112101495 112101748 253 0
Rb SenescentGSE19898 112099514 112100360 846 0
TAF k562GSE8489 112100606 112101170 564 0
TFAP2C MCF7GSE21234 112099405 112100165 760 0
hScc1 BcellGSE12603 112099324 112100333 1009 0
p130 QuiescentGSE19898 112099699 112100242 543 0
p130 SenescentGSE19898 112099293 112100322 1029 0
p130 shRbQuiescentGSE19898 112099774 112100341 567 0
p130 shRbSenescentGSE19898 112099278 112100390 1112 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 12554860
hsa-let-7a hsa-let-7a-2 11 12554860
hsa-let-7a hsa-let-7a-3 22 12554860
hsa-let-7a* hsa-let-7a-1 9 12554860
hsa-let-7a* hsa-let-7a-3 22 12554860
hsa-let-7b hsa-let-7b 22 14970384
hsa-let-7b* hsa-let-7b 22 14970384
hsa-miR-100 hsa-mir-100 11 20585341
hsa-miR-100 hsa-mir-100 11 19138993
hsa-miR-100 hsa-mir-100 11 11914277
hsa-miR-100 hsa-mir-100 11 20732906
hsa-miR-100* hsa-mir-100 11 20585341
hsa-miR-100* hsa-mir-100 11 19138993
hsa-miR-100* hsa-mir-100 11 11914277
hsa-miR-100* hsa-mir-100 11 20732906
hsa-miR-101 hsa-mir-101-1 1 11914277
hsa-miR-101 hsa-mir-101-2 9 11914277
hsa-miR-101* hsa-mir-101-1 1 11914277
hsa-miR-103 hsa-mir-103-2 20 11914277
hsa-miR-103 hsa-mir-103-1 5 11914277
hsa-miR-105 hsa-mir-105-1 X 11914277
hsa-miR-105 hsa-mir-105-2 X 11914277
hsa-miR-105* hsa-mir-105-1 X 11914277
hsa-miR-105* hsa-mir-105-2 X 11914277
hsa-miR-106a hsa-mir-106a X 12554860
hsa-miR-106a hsa-mir-106a X 11914277
hsa-miR-106a* hsa-mir-106a X 12554860
hsa-miR-106a* hsa-mir-106a X 11914277
hsa-miR-107 hsa-mir-107 10 11914277
hsa-miR-124 hsa-mir-124-1 8 19138993
hsa-miR-124 hsa-mir-124-1 8 12554860
hsa-miR-124 hsa-mir-124-2 8 12554860
hsa-miR-124 hsa-mir-124-3 20 12554860
hsa-miR-124 hsa-mir-124-1 8 20732906
hsa-miR-124* hsa-mir-124-1 8 19138993
hsa-miR-124* hsa-mir-124-1 8 12554860
hsa-miR-124* hsa-mir-124-2 8 12554860
hsa-miR-124* hsa-mir-124-3 20 12554860
hsa-miR-124* hsa-mir-124-1 8 20732906
hsa-miR-146a hsa-mir-146a 5 20585341
hsa-miR-146a hsa-mir-146a 5 19138993
hsa-miR-146a hsa-mir-146a 5 20732906
hsa-miR-146a* hsa-mir-146a 5 20585341
hsa-miR-146a* hsa-mir-146a 5 19138993
hsa-miR-146a* hsa-mir-146a 5 20732906
hsa-miR-15a hsa-mir-15a 13 12554860
hsa-miR-15a* hsa-mir-15a 13 12554860
hsa-miR-15b hsa-mir-15b 3 12554860
hsa-miR-15b* hsa-mir-15b 3 12554860
hsa-miR-16 hsa-mir-16-1 13 11914277
hsa-miR-16 hsa-mir-16-2 3 11914277
hsa-miR-16-1* hsa-mir-16-1 13 11914277
hsa-miR-16-2* hsa-mir-16-2 3 11914277
hsa-miR-17 hsa-mir-17 13 12554860
hsa-miR-17 hsa-mir-17 13 11914277
hsa-miR-17* hsa-mir-17 13 12554860
hsa-miR-17* hsa-mir-17 13 11914277
hsa-miR-181a hsa-mir-181a-2 9 12554860
hsa-miR-181a hsa-mir-181a-1 1 12554860
hsa-miR-181a* hsa-mir-181a-1 1 12554860
hsa-miR-181a-2* hsa-mir-181a-2 9 12554860
hsa-miR-183 hsa-mir-183 7 12554860
hsa-miR-183* hsa-mir-183 7 12554860
hsa-miR-184 hsa-mir-184 15 12554860
hsa-miR-185 hsa-mir-185 22 12554860
hsa-miR-185* hsa-mir-185 22 12554860
hsa-miR-186 hsa-mir-186 1 12554860
hsa-miR-186* hsa-mir-186 1 12554860
hsa-miR-187 hsa-mir-187 18 12554860
hsa-miR-187* hsa-mir-187 18 12554860
hsa-miR-188-3p hsa-mir-188 X 12554860
hsa-miR-188-5p hsa-mir-188 X 12554860
hsa-miR-18a hsa-mir-18a 13 11914277
hsa-miR-18a* hsa-mir-18a 13 11914277
hsa-miR-190 hsa-mir-190 15 12554860
hsa-miR-191 hsa-mir-191 3 12554860
hsa-miR-191* hsa-mir-191 3 12554860
hsa-miR-192 hsa-mir-192 11 12554860
hsa-miR-192* hsa-mir-192 11 12554860
hsa-miR-196a hsa-mir-196a-2 12 20585341
hsa-miR-196a hsa-mir-196a-2 12 19138993
hsa-miR-196a hsa-mir-196a-2 12 20732906
hsa-miR-196a* hsa-mir-196a-2 12 20585341
hsa-miR-196a* hsa-mir-196a-2 12 19138993
hsa-miR-196a* hsa-mir-196a-2 12 20732906
hsa-miR-196b hsa-mir-196b 7 12554860
hsa-miR-19a hsa-mir-19a 13 12554860
hsa-miR-19a hsa-mir-19a 13 11914277
hsa-miR-19a* hsa-mir-19a 13 12554860
hsa-miR-19a* hsa-mir-19a 13 11914277
hsa-miR-19b hsa-mir-19b-1 13 12554860
hsa-miR-19b hsa-mir-19b-2 X 12554860
hsa-miR-19b hsa-mir-19b-1 13 11914277
hsa-miR-19b hsa-mir-19b-2 X 11914277
hsa-miR-19b-1* hsa-mir-19b-1 13 12554860
hsa-miR-19b-1* hsa-mir-19b-1 13 11914277
hsa-miR-19b-2* hsa-mir-19b-2 X 12554860
hsa-miR-19b-2* hsa-mir-19b-2 X 11914277
hsa-miR-20a hsa-mir-20a 13 12554860
hsa-miR-20a* hsa-mir-20a 13 12554860
hsa-miR-21 hsa-mir-21 17 12554860
hsa-miR-21 hsa-mir-21 17 11914277
hsa-miR-21* hsa-mir-21 17 12554860
hsa-miR-21* hsa-mir-21 17 11914277
hsa-miR-219-1-3p hsa-mir-219-1 6 20585341
hsa-miR-219-1-3p hsa-mir-219-1 6 19138993
hsa-miR-219-1-3p hsa-mir-219-1 6 20732906
hsa-miR-219-5p hsa-mir-219-1 6 20585341
hsa-miR-219-5p hsa-mir-219-1 6 19138993
hsa-miR-219-5p hsa-mir-219-1 6 20732906
hsa-miR-22 hsa-mir-22 17 11914277
hsa-miR-22* hsa-mir-22 17 11914277
hsa-miR-224 hsa-mir-224 X 12554860
hsa-miR-23a hsa-mir-23a 19 11914277
hsa-miR-23a* hsa-mir-23a 19 11914277
hsa-miR-24 hsa-mir-24-1 9 11914277
hsa-miR-24 hsa-mir-24-2 19 11914277
hsa-miR-24-1* hsa-mir-24-1 9 11914277
hsa-miR-24-2* hsa-mir-24-2 19 11914277
hsa-miR-26a hsa-mir-26a-1 3 20585341
hsa-miR-26a hsa-mir-26a-2 12 20585341
hsa-miR-26a hsa-mir-26a-1 3 19138993
hsa-miR-26a hsa-mir-26a-1 3 20732906
hsa-miR-26a-1* hsa-mir-26a-1 3 20585341
hsa-miR-26a-1* hsa-mir-26a-1 3 19138993
hsa-miR-26a-1* hsa-mir-26a-1 3 20732906
hsa-miR-27a hsa-mir-27a 19 11914277
hsa-miR-27a* hsa-mir-27a 19 11914277
hsa-miR-27b hsa-mir-27b 9 12554860
hsa-miR-27b* hsa-mir-27b 9 12554860
hsa-miR-29a hsa-mir-29a 7 12554860
hsa-miR-29a* hsa-mir-29a 7 12554860
hsa-miR-29b hsa-mir-29b-1 7 11914277
hsa-miR-29b hsa-mir-29b-2 1 11914277
hsa-miR-29b-1* hsa-mir-29b-1 7 11914277
hsa-miR-29b-2* hsa-mir-29b-2 1 11914277
hsa-miR-29c hsa-mir-29c 1 12554860
hsa-miR-29c* hsa-mir-29c 1 12554860
hsa-miR-30a hsa-mir-30a 6 19138993
hsa-miR-30a hsa-mir-30a 6 11914277
hsa-miR-30a hsa-mir-30a 6 20732906
hsa-miR-30a* hsa-mir-30a 6 19138993
hsa-miR-30a* hsa-mir-30a 6 11914277
hsa-miR-30a* hsa-mir-30a 6 20732906
hsa-miR-30c hsa-mir-30c-1 1 19138993
hsa-miR-30c hsa-mir-30c-1 1 20732906
hsa-miR-30c-1* hsa-mir-30c-1 1 19138993
hsa-miR-30c-1* hsa-mir-30c-1 1 20732906
hsa-miR-34a hsa-mir-34a 1 12554860
hsa-miR-34a* hsa-mir-34a 1 12554860
hsa-miR-373 hsa-mir-373 19 19138993
hsa-miR-373 hsa-mir-373 19 20732906
hsa-miR-373* hsa-mir-373 19 19138993
hsa-miR-373* hsa-mir-373 19 20732906
hsa-miR-423-3p hsa-mir-423 17 20585341
hsa-miR-423-3p hsa-mir-423 17 19138993
hsa-miR-423-3p hsa-mir-423 17 20732906
hsa-miR-423-5p hsa-mir-423 17 20585341
hsa-miR-423-5p hsa-mir-423 17 19138993
hsa-miR-423-5p hsa-mir-423 17 20732906
hsa-miR-424 hsa-mir-424 X 17327266
hsa-miR-424* hsa-mir-424 X 17327266
hsa-miR-492 hsa-mir-492 12 19138993
hsa-miR-492 hsa-mir-492 12 20732906
hsa-miR-604 hsa-mir-604 10 20585341
hsa-miR-604 hsa-mir-604 10 19138993
hsa-miR-604 hsa-mir-604 10 20732906
hsa-miR-608 hsa-mir-608 10 19138993
hsa-miR-608 hsa-mir-608 10 20732906
hsa-miR-631 hsa-mir-631 15 19138993
hsa-miR-631 hsa-mir-631 15 20732906
hsa-miR-92a hsa-mir-92a-1 13 12554860
hsa-miR-92a hsa-mir-92a-2 X 12554860
hsa-miR-92a hsa-mir-92a-1 13 11914277
hsa-miR-92a hsa-mir-92a-2 X 11914277
hsa-miR-92a-1* hsa-mir-92a-1 13 12554860
hsa-miR-92a-1* hsa-mir-92a-1 13 11914277
hsa-miR-92a-2* hsa-mir-92a-2 X 12554860
hsa-miR-92a-2* hsa-mir-92a-2 X 11914277
hsa-miR-93 hsa-mir-93 7 17327266
hsa-miR-93 hsa-mir-93 7 12554860
hsa-miR-93 hsa-mir-93 7 11914277
hsa-miR-93* hsa-mir-93 7 17327266
hsa-miR-93* hsa-mir-93 7 12554860
hsa-miR-93* hsa-mir-93 7 11914277
hsa-miR-95 hsa-mir-95 4 11914277
hsa-miR-96 hsa-mir-96 7 11914277
hsa-miR-96* hsa-mir-96 7 11914277
hsa-miR-98 hsa-mir-98 X 11914277
hsa-miR-99a hsa-mir-99a 21 11914277
hsa-miR-99a* hsa-mir-99a 21 11914277
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
1295 mRNA DDX20 chr1 112010295 112022240 97 mRNA LOC55924 chr1 111980411 112010461Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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