AutismKB 2.0

Annotation Detail for RNF139


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Basic Information Top
Gene Symbol:RNF139 ( HRCA1,MGC31961,RCA1,TRC8 )
Gene Full Name: ring finger protein 139
Band: 8q24.13
Quick LinksEntrez ID:11236; OMIM: 603046; Uniprot ID:RN139_HUMAN; ENSEMBL ID: ENSG00000170881; HGNC ID: 17023
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
625Phosphoserine.
634Phosphoserine.
635Phosphothreonine.
663Phosphothreonine.
Location(AA) Modifications Resource
663Phosphothreonine.Swiss-Prot 53.0
663PhosphothreoninePhospho.ELM 6.0
Location(AA) Modification Resource
110N-linkedHMM predict
111Phosphothreonine(PKC)HMM predict
152Phosphoserine(ATM)HMM predict
261N-linkedHMM predict
377Phosphoserine(IKK)HMM predict
462Phosphotyrosine(Syk)HMM predict
611N-linkedHMM predict
613Phosphothreonine(CDC2)HMM predict
613Phosphothreonine(CDK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_007218
  • Location:chr8 125556188-125570038
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER MCF7GSE19013 125545670 125546346 676 10181
FOXA1 MCF7GSE15244 125555115 125556259 1144 502
GATA3 MCF7GSE15244 125546451 125546854 403 9536
H3K4me3 colorectalcancer 125554670 125555259 589 1224
H3ac HepG2E 125554066 125555772 1706 1270
Oct1 HelaGSE14283 125552345 125552379 34 3827
RARA MCF7GSE15244 125554776 125556259 1483 671
RARG MCF7GSE15244 125546451 125546891 440 9518
RARG MCF7GSE15244 125555115 125556019 904 622
Rb QuiescentGSE19898 125555656 125556126 470 298
TAF HelaGSE8489 125554569 125556019 1450 895
TAF k562GSE8489 125554066 125555772 1706 1270
p130 shRbQuiescentGSE19898 125554951 125555730 779 848
p130 shRbSenescentGSE19898 125555219 125555766 547 696
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 125555479 125557368 1889 0
FOXA1 MCF7GSE15244 125556671 125557373 702 0
FOXA1 MCF7GSE15244 125565554 125565951 397 0
GATA3 MCF7GSE15244 125556908 125558169 1261 0
H3K4me2 HCT116GSE10453 125556767 125558169 1402 0
H3K4me3 colorectalcancer 125556692 125557664 972 0
H3ac HepG2E 125556692 125557409 717 0
PHF8 293TGSE20725 125555376 125557060 1684 0
RARA MCF7GSE15244 125556801 125558244 1443 0
RARG MCF7GSE15244 125556829 125558169 1340 0
TAF HelaGSE8489 125556767 125557409 642 0
TAF k562GSE8489 125556767 125558546 1779 0
p130 shRbQuiescentGSE19898 125556518 125557114 596 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
25926 mRNA RNF139 chr8 125556188 125570040 109 mRNA TATDN1 chr8 125569931 125620492Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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