Annotation Detail for CHP

View Evidences	View Variants	View Annotations

Basic Information Top

Gene Symbol:	CHP ( SLC9A1BP )
Gene Full Name:	-
Band:	15q13.3
Quick Links	Entrez ID:11261; OMIM: 606988; Uniprot ID:CHP1_HUMAN; ENSEMBL ID: ENSG00000187446; HGNC ID:
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:1 results
Predicted PTM Sites by profile HMM from dbPTM:4 results

No data

Location(AA)	Modification	Resource
43	N-linked	HMM predict
131	Phosphoserine(CK2)	HMM predict
193	Phenylalanine	HMM predict
194	Phenylalanine	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_007236
Location:chr15 39310728-39361372
strand:+

Upstream the gene:1 results
Downstream the gene:19 results
Inside the gene:12 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
hScc1	Bcell	GSE12603	39310136	39310998	862	162

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Fos	K562	GSE19551	39362927	39363796	869	1989
H3ac	HepG2	E	39362612	39362823	211	1345
H3ac	HepG2	E	39363151	39363455	304	1931
H3ac	HepG2	E	39363772	39364768	996	2898
PHF8	293T	GSE20725	39363111	39364059	948	2213
PHF8	HeLa	GSE20725	39363025	39364151	1126	2216
PHF8	Hs68plusFBS	GSE20725	39362922	39364503	1581	2340
Rb	Senescent	GSE19898	39363287	39363538	251	2040
TAF	Hela	GSE8489	39363151	39363570	419	1988
TAF	Hela	GSE8489	39363811	39364768	957	2917
TAF	k562	GSE8489	39363883	39364768	885	2953
USF1	HepG2	E	39362612	39362823	211	1345
USF1	HepG2	E	39363151	39363676	525	2041
USF2	HepG2	E	39363151	39363363	212	1885
hScc1	Bcell	GSE12603	39363524	39364110	586	2445
p130	Quiescent	GSE19898	39363121	39363552	431	1964
p130	Senescent	GSE19898	39363154	39363689	535	2049
p130	shRbQuiescent	GSE19898	39363042	39363664	622	1981
p130	shRbSenescent	GSE19898	39363142	39363601	459	1999

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FoxA1	MCF7	MACSdata	39336072	39336296	224	0
H3K4me3	colorectal	cancer	39311194	39311672	478	0
H3ac	HepG2	E	39310832	39311672	840	0
H3ac	HepG2	E	39312016	39313400	1384	0
H3ac	HepG2	E	39320760	39321313	553	0
Myc	K562	GSE19551	39320736	39321088	352	0
Oct1	Hela	GSE14283	39323647	39323727	80	0
Oct1	Hela	GSE14283	39357172	39357204	32	0
PHF8	293T	GSE20725	39310333	39311272	939	0
RARA	MCF7	GSE15244	39335767	39336702	935	0
TAF	Hela	GSE8489	39311120	39311672	552	0
TAF	Hela	GSE8489	39347463	39347741	278	0

Validated miRNA targets

miR Walk:7 results
Tarbase V5.0:0 results

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-1	hsa-mir-1-2	18	15685193
hsa-miR-1	hsa-mir-1-1	20	15685193
hsa-miR-124	hsa-mir-124-1	8	15685193
hsa-miR-124	hsa-mir-124-2	8	15685193
hsa-miR-124	hsa-mir-124-3	20	15685193
hsa-miR-373	hsa-mir-373	19	15685193
hsa-miR-373*	hsa-mir-373	19	15685193

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved