AutismKB 2.0

Annotation Detail for USP18


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Basic Information Top
Gene Symbol:USP18 ( ISG43,UBP43 )
Gene Full Name: ubiquitin specific peptidase 18
Band: 22q11.2
Quick LinksEntrez ID:11274; OMIM: 607057; Uniprot ID:UBP18_HUMAN; ENSEMBL ID: ENSG00000184979; HGNC ID: 12616
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
20Phosphoserine(ATM)HMM predict
22Phosphoserine(IKK)HMM predict
65S-palmitoylHMM predict
223Phosphoserine(CK1)HMM predict
223Phosphoserine(CK2)HMM predict
237PhosphothreonineHMM predict
282Phosphoserine(ATM)HMM predict
335N-linkedHMM predict
338N-linkedHMM predict
367Phosphotyrosine(INSR)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_017414
  • Location:chr22 17012757-17040159
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3ac HepG2E 17011082 17011822 740 1306
PHF8 293TGSE20725 17012065 17013271 1206 90
PolII HeLaGSE12783 17012087 17013344 1257 42
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 17043659 17044292 633 3816
FOXA1 MCF7GSE15244 17044915 17045331 416 4964
FOXA1 MCF7GSE15244 17045629 17046186 557 5748
FOXA1 MCF7GSE15244 17046626 17047799 1173 7053
RARA MCF7GSE15244 17043625 17044292 667 3799
RARA MCF7GSE15244 17044915 17048091 3176 6344
RARA MCF7GSE15244 17051393 17051946 553 11510
RARG MCF7GSE15244 17040823 17041800 977 1152
RARG MCF7GSE15244 17043695 17044292 597 3834
RARG MCF7GSE15244 17045709 17047909 2200 6650
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 17020009 17020240 231 0
CTCF CD4SISSRdata 17020009 17020240 231 0
CTCF HelaGSE12889 17019979 17020297 318 0
CTCF JurkatGSE12889 17020000 17020222 222 0
CTCF G2GSE9613 17020097 17020663 566 0
ER MCF7GSE19013 17027150 17027785 635 0
FOXA1 MCF7GSE15244 17014199 17014506 307 0
Fos K562GSE19551 17018854 17019193 339 0
H3ac HepG2E 17013942 17014506 564 0
NFkBII GM15510GSE19485 17012198 17013593 1395 0
Pol2 GM12878GSE19551 17012483 17013143 660 0
RARG MCF7GSE15244 17014199 17014506 307 0
Rb GrowingGSE19898 17020290 17020668 378 0
Rb SenescentGSE19898 17012705 17013028 323 0
TAFII hESGSE17917 17019993 17020275 282 0
hScc1 BcellGSE12603 17012723 17012899 176 0
hScc1 BcellGSE12603 17020097 17020644 547 0
hScc1 BcellGSE12603 17024576 17024791 215 0
hScc1 CdLSGSE12603 17020097 17020528 431 0
hScc1 G2GSE9613 17020097 17020663 566 0
p130 QuiescentGSE19898 17020068 17020253 185 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
17122 mRNA USP18 chr22 17007311 17034714 1706 EST chr22 17019463 17021169 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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