Annotation Detail for SYNRG
Basic Information Top
| Gene Symbol: | SYNRG ( AP1GBP1,FLJ34482,MGC104959,SYNG ) |
|---|---|
| Gene Full Name: | synergin, gamma |
| Band: | 17q12 |
| Quick Links | Entrez ID:11276; OMIM: 607291; Uniprot ID:SYNRG_HUMAN; ENSEMBL ID: ENSG00000006114; HGNC ID: 557 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 461 | DFXDF motif 1. | |
| 473 | Phosphoserine. | |
| 513 | N6-acetyllysine. | |
| 694 | DFXDF motif 2. | |
| 744 | N6-acetyllysine. | |
| 752 | Phosphoserine. | |
| 756 | Phosphoserine. | |
| 779 | DFXDF motif 3. | |
| 852 | Phosphoserine. | |
| 855 | Phosphoserine. | |
| 909 | Phosphoserine. | |
| 919 | Phosphoserine. | |
| 935 | Phosphoserine. | |
| 936 | Phosphoserine. | |
| 1073 | Phosphoserine. | |
| 1075 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|
| No data |
- RefSeq ID: NM_007247
- Location:chr17 32952051-33043558
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Fos | K562 | GSE19551 | 33043326 | 33044000 | 674 | 105 |
| Gata1 | K562 | GSE18868 | 33043223 | 33043956 | 733 | 31 |
| Gata2 | K562 | GSE18868 | 33043253 | 33043920 | 667 | 28 |
| KLF4 | hES | GSE17917 | 33043444 | 33043714 | 270 | 21 |
| USF1 | HepG2 | E | 33044704 | 33045319 | 615 | 1453 |
| USF2 | HepG2 | E | 33043718 | 33044247 | 529 | 424 |
| USF2 | HepG2 | E | 33044704 | 33045284 | 580 | 1436 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 32961495 | 32961736 | 241 | 0 |
| CTCF | CD4 | SISSRdata | 32961495 | 32961736 | 241 | 0 |
| CTCF | G2 | GSE9613 | 32961563 | 32961703 | 140 | 0 |
| CTCF | G2 | GSE9613 | 33004729 | 33005000 | 271 | 0 |
| CTCF | G2 | GSE9613 | 33043290 | 33043676 | 386 | 0 |
| ER | E2-MCF7 | GSE14664 | 32955728 | 32955774 | 46 | 0 |
| ER | Fulvestrant-MCF7 | GSE14664 | 32955727 | 32955768 | 41 | 0 |
| ER | Fulvestrant-MCF7 | GSE14664 | 33032938 | 33032971 | 33 | 0 |
| H3ac | HepG2 | E | 33042205 | 33043212 | 1007 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 33032939 | 33032969 | 30 | 0 |
| Oct1 | Hela | GSE14283 | 32955726 | 32955768 | 42 | 0 |
| Oct1 | Hela | GSE14283 | 32985304 | 32985334 | 30 | 0 |
| Oct1 | Hela | GSE14283 | 33032938 | 33032967 | 29 | 0 |
| Oct1 | Hela | GSE14283 | 33039800 | 33039833 | 33 | 0 |
| TAF | k562 | GSE8489 | 33042182 | 33043120 | 938 | 0 |
| USF1 | HepG2 | E | 33042241 | 33044247 | 2006 | 0 |
| USF2 | HepG2 | E | 33042481 | 33043290 | 809 | 0 |
| hScc1 | Bcell | GSE12603 | 33043183 | 33043718 | 535 | 0 |
| hScc1 | CdLS | GSE12603 | 32961381 | 32961703 | 322 | 0 |
| hScc1 | CdLS | GSE12603 | 33004729 | 33004929 | 200 | 0 |
| hScc1 | CdLS | GSE12603 | 33042961 | 33043993 | 1032 | 0 |
| p63 | keratinocytes | GSE17611 | 32985999 | 32986690 | 691 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11008 | mRNA | chr17 | 32985897 | 32986088 | 191 | mRNA | AP1GBP1 | chr17 | 32952045 | 33043559 | Non-exonic Bidirectional (NOB) pairs | |