Annotation Detail for SLC46A1

View Evidences	View Variants	View Annotations

Basic Information Top

Gene Symbol:	SLC46A1 ( FLJ39875,HCP1,MGC9564,PCFT )
Gene Full Name:	solute carrier family 46 (folate transporter), member 1
Band:	17q11.2
Quick Links	Entrez ID:113235; OMIM: 611672; Uniprot ID:PCFT_HUMAN; ENSEMBL ID: ENSG00000076351; HGNC ID: 30521
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:4 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
1	N-acetylmethionine.
6	Phosphoserine.
58	N-linked (GlcNAc...).
458	Phosphoserine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_080669
Location:chr17 23750178-23757354
strand:-

Upstream the gene:9 results
Downstream the gene:0 results
Inside the gene:8 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	23768028	23768284	256	10802
CTCF	CD4	SISSRdata	23768028	23768284	256	10802
CTCF	G2	GSE9613	23767828	23768513	685	10816
ER	E2-MCF7	GSE14664	23759558	23759590	32	2220
RARG	MCF7	GSE15244	23765931	23766173	242	8698
TAFII	hES	GSE17917	23768098	23768379	281	10884
hScc1	Bcell	GSE12603	23767794	23768513	719	10799
hScc1	CdLS	GSE12603	23767794	23768513	719	10799
p63	keratinocytes	GSE17611	23758306	23759496	1190	1547

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	23756282	23756567	285	0
CTCF	G2	GSE9613	23756813	23757543	730	0
H3ac	HepG2	E	23756567	23756951	384	0
Nanog	ES	GSE20650	23753369	23754199	830	0
Nanog	hES	GSE18292	23753369	23754025	656	0
Oct1	Hela	GSE14283	23751107	23751142	35	0
PHF8	HeLa	GSE20725	23756849	23757807	958	0
hScc1	Bcell	GSE12603	23756318	23757436	1118	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
10848	mRNA	SARM1	chr17	23723252	23752192	836	mRNA	MGC9564	chr17	23750178	23757355	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved