Annotation Detail for DDX42
Basic Information Top
| Gene Symbol: | DDX42 ( FLJ43179,RHELP,RNAHP,SF3b125 ) |
|---|---|
| Gene Full Name: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 |
| Band: | 17q23.3 |
| Quick Links | Entrez ID:11325; OMIM: 613369; Uniprot ID:DDX42_HUMAN; ENSEMBL ID: ENSG00000198231; HGNC ID: 18676 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 5 | N6-acetyllysine. | |
| 10 | Phosphothreonine. | |
| 96 | Phosphoserine. | |
| 104 | Phosphoserine. | |
| 109 | Phosphoserine. | |
| 111 | Phosphoserine. | |
| 185 | Phosphoserine. | |
| 281 | Q motif. | |
| 410 | DEAD box. | |
| 751 | Phosphoserine. | |
| 754 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 10 | Phosphothreonine. | Swiss-Prot 53.0 |
| 10 | Phosphothreonine | Phospho.ELM 6.0 |
| 96 | Phosphoserine. | Swiss-Prot 53.0 |
| 96 | Phosphoserine | Phospho.ELM 6.0 |
| 109 | Phosphoserine. | Swiss-Prot 53.0 |
| 109 | Phosphoserine | Phospho.ELM 6.0 |
| 111 | Phosphoserine | Phospho.ELM 6.0 |
| 111 | Phosphoserine. | Swiss-Prot 53.0 |
| 185 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
| 185 | Phosphoserine | Phospho.ELM 6.0 |
| 751 | Phosphoserine | Phospho.ELM 6.0 |
| 754 | Phosphoserine | Phospho.ELM 6.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 42 | O-linked | HMM predict |
| 46 | O-linked | HMM predict |
| 75 | Sulfotyrosine | HMM predict |
| 83 | Phosphoserine(CK1) | HMM predict |
| 90 | Phosphotyrosine(Jak) | HMM predict |
| 167 | N-linked | HMM predict |
| 183 | Sulfotyrosine | HMM predict |
| 210 | Sulfotyrosine | HMM predict |
| 218 | Phosphotyrosine(EGFR) | HMM predict |
| 218 | Phosphotyrosine(Syk) | HMM predict |
| 226 | N-linked | HMM predict |
| 244 | O-linked | HMM predict |
| 383 | Phosphothreonine(CDC2) | HMM predict |
| 715 | Phosphoserine(PKG) | HMM predict |
| 751 | Phosphoserine(ATM) | HMM predict |
| 751 | Phosphoserine(CDK) | HMM predict |
| 751 | Phosphoserine(CDC2) | HMM predict |
| 754 | Phosphoserine(IKK) | HMM predict |
| 754 | Phosphoserine(CDC2) | HMM predict |
| 771 | N-linked | HMM predict |
| 781 | O-linked | HMM predict |
| 788 | N-linked | HMM predict |
| 789 | N-linked | HMM predict |
| 794 | N-linked | HMM predict |
| 795 | N-linked | HMM predict |
| 844 | Phosphotyrosine(INSR) | HMM predict |
| 844 | Phosphotyrosine(EGFR) | HMM predict |
| 850 | O-linked | HMM predict |
| 850 | Phosphoserine(CK1) | HMM predict |
| 875 | Methylarginine | HMM predict |
| 934 | Phosphoserine(PKA) | HMM predict |
- RefSeq ID: NM_007372
- Location:chr17 59205298-59250407
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3ac | HepG2 | E | 59204827 | 59205240 | 413 | 265 |
| P300 | T30-glioblastoma | GSE21026 | 59203715 | 59206335 | 2620 | 274 |
| PHF8 | HeLa | GSE20725 | 59204265 | 59205936 | 1671 | 198 |
| PHF8 | Hs68minusFBS | GSE20725 | 59203982 | 59206001 | 2019 | 307 |
| PHF8 | Hs68plusFBS | GSE20725 | 59203980 | 59206020 | 2040 | 299 |
| USF1 | HepG2 | E | 59204719 | 59205430 | 711 | 224 |
| USF2 | HepG2 | E | 59204783 | 59205268 | 485 | 273 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 59248863 | 59249188 | 325 | 0 |
| H3K4me2 | HCT116 | GSE10453 | 59205836 | 59206933 | 1097 | 0 |
| H3K4me3 | colorectal | cancer | 59205738 | 59207147 | 1409 | 0 |
| H3ac | HepG2 | E | 59205621 | 59207580 | 1959 | 0 |
| H3ac | HepG2 | E | 59208842 | 59209708 | 866 | 0 |
| STAT1 | IFN | SISSRdata | 59249731 | 59250447 | 716 | 0 |
| TAF | k562 | GSE8489 | 59205942 | 59206723 | 781 | 0 |
| p63 | keratinocytes | GSE17611 | 59223369 | 59223889 | 520 | 0 |
Validated miRNA targets