Annotation Detail for LRRC42
Basic Information Top
| Gene Symbol: | LRRC42 ( MGC8974,dJ167A19.4 ) |
|---|---|
| Gene Full Name: | leucine rich repeat containing 42 |
| Band: | 1p32.3 |
| Quick Links | Entrez ID:115353; OMIM: NA; Uniprot ID:LRC42_HUMAN; ENSEMBL ID: ENSG00000116212; HGNC ID: 28792 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 407 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 17 | Phosphotyrosine(INSR) | HMM predict |
| 154 | S-palmitoyl | HMM predict |
| 201 | Phosphoserine(CK1) | HMM predict |
| 222 | Phosphothreonine(PKA) | HMM predict |
| 234 | N-linked | HMM predict |
| 275 | Phosphothreonine(PKC) | HMM predict |
| 328 | Phosphoserine(CK1) | HMM predict |
| 342 | Phosphoserine(PKG) | HMM predict |
| 384 | Phosphoserine(CK1) | HMM predict |
| 385 | Phosphoserine(ATM) | HMM predict |
| 404 | N-linked | HMM predict |
| 405 | N-linked | HMM predict |
| 407 | Phosphoserine(ATM) | HMM predict |
| 414 | Phosphotyrosine(INSR) | HMM predict |
| 416 | S-farnesyl | HMM predict |
- RefSeq ID: NM_052940
- Location:chr1 54184624-54206426
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Rb | Growing | GSE19898 | 54184126 | 54184459 | 333 | 332 |
| p130 | Quiescent | GSE19898 | 54184150 | 54184443 | 293 | 328 |
| p130 | shRbSenescent | GSE19898 | 54184373 | 54184526 | 153 | 175 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| p130 | Quiescent | GSE19898 | 54220396 | 54220600 | 204 | 14072 |
| p130 | Quiescent | GSE19898 | 54220619 | 54221191 | 572 | 14479 |
| p130 | shRbQuiescent | GSE19898 | 54220513 | 54221104 | 591 | 14382 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 54187404 | 54187592 | 188 | 0 |
| CTCF | CD4 | GSE12889 | 54197961 | 54198220 | 259 | 0 |
| CTCF | CD4 | SISSRdata | 54187404 | 54187592 | 188 | 0 |
| CTCF | CD4 | SISSRdata | 54197961 | 54198220 | 259 | 0 |
| FOXA1 | MCF7 | GSE15244 | 54194904 | 54195793 | 889 | 0 |
| H3ac | HepG2 | E | 54185138 | 54186911 | 1773 | 0 |
| LIN9 | G0 | GSE7516 | 54189227 | 54189405 | 178 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 54187480 | 54187508 | 28 | 0 |
| Oct1 | Hela | GSE14283 | 54197349 | 54197382 | 33 | 0 |
| hScc1 | Bcell | GSE12603 | 54197898 | 54198153 | 255 | 0 |
| hScc1 | CdLS | GSE12603 | 54197657 | 54198153 | 496 | 0 |
| p130 | shRbQuiescent | GSE19898 | 54185225 | 54185560 | 335 | 0 |
Validated miRNA targets