Annotation Detail for C3orf24

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Basic Information Top

Gene Symbol:	C3orf24 ( MGC40179 )
Gene Full Name:	chromosome 3 open reading frame 24
Band:	3p25.3
Quick Links	Entrez ID:115795; OMIM: NA; Uniprot ID:CC024_HUMAN; ENSEMBL ID: ; HGNC ID:
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:8 results

No data

Location(AA)	Modification	Resource
7	C-linked	HMM predict
10	C-linked	HMM predict
26	Phosphothreonine(MAPK)	HMM predict
26	Phosphothreonine(CDK)	HMM predict
36	Phosphoserine(CDC2)	HMM predict
69	Phosphoserine(CDK)	HMM predict
170	Threonine	HMM predict
173	Leucine	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_173472
Location:chr3 10098004-10124914
strand:-

Upstream the gene:1 results
Downstream the gene:0 results
Inside the gene:8 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	10124851	10125169	318	96

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FOXA1	MCF7	GSE15244	10102387	10102756	369	0
Oct1	H2O2-Hela	GSE14283	10116622	10116655	33	0
Oct1	Hela	GSE14283	10108101	10108142	41	0
Oct1	Hela	GSE14283	10116622	10116652	30	0
RARA	MCF7	GSE15244	10102387	10102824	437	0
RARG	MCF7	GSE15244	10102387	10102756	369	0
RNAII	Tamoxifen-MCF7	GSE14664	10108100	10108141	41	0
Rb	Growing	GSE19898	10121234	10121390	156	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
17753	mRNA	FANCD2	chr3	10043127	10116344	119	mRNA	MGC40179	chr3	10098004	10124915	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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