AutismKB 2.0

Annotation Detail for RAB3C


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Basic Information Top
Gene Symbol:RAB3C ( - )
Gene Full Name: RAB3C, member RAS oncogene family
Band: 5q11.2
Quick LinksEntrez ID:115827; OMIM: 612829; Uniprot ID:RAB3C_HUMAN; ENSEMBL ID: ENSG00000152932; HGNC ID: 30269
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
67Effector region (By similarity).
227Cysteine methyl ester (By similarity).
Location(AA) Modifications Resource
225S-geranylgeranyl cysteine (Bysimilarity).Swiss-Prot 53.0
227S-geranylgeranyl cysteine (Bysimilarity).Swiss-Prot 53.0
Location(AA) Modification Resource
38N-linkedHMM predict
154Phosphoserine(CK1)HMM predict
225CysteineHMM predict
226AlanineHMM predict
227S-farnesylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_138453
  • Location:chr5 57914695-58183161
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER Fulvestrant-MCF7GSE14664 57904405 57904491 86 10248
P300 T30-glioblastomaGSE21026 57914148 57914853 705 195
p130 QuiescentGSE19898 57914493 57914713 220 93
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 57959058 57959273 215 0
CTCF CD4GSE12889 58182001 58182215 214 0
CTCF CD4SISSRdata 58182001 58182215 214 0
CTCF G2GSE9613 57972773 57973099 326 0
CTCF G2GSE9613 58143259 58143401 142 0
CTCF G2GSE9613 58181880 58182267 387 0
ER E2-MCF7GSE14664 58007694 58007809 115 0
ER Fulvestrant-MCF7GSE14664 58038586 58038626 40 0
Fos K562GSE19551 58082797 58083258 461 0
FoxA1 MCF7MACSdata 58000933 58001071 138 0
FoxA1 MCF7MACSdata 58181574 58181833 259 0
KLF4 hESGSE17917 57964328 57964484 156 0
Myc hESGSE17917 58048805 58049098 293 0
NRSF-mono JurkatQuESTdata 57973229 57973543 314 0
Nanog hESGSE18292 58049203 58050187 984 0
Oct1 H2O2-HelaGSE14283 57995849 57995881 32 0
Oct1 H2O2-HelaGSE14283 58110124 58110152 28 0
Oct1 H2O2-HelaGSE14283 58147423 58147459 36 0
Oct1 H2O2-HelaGSE14283 58148253 58148293 40 0
Oct1 H2O2-HelaGSE14283 58161364 58161400 36 0
Oct1 H2O2-HelaGSE14283 58167694 58167719 25 0
Oct1 HelaGSE14283 58070331 58070367 36 0
Oct1 HelaGSE14283 58147422 58147459 37 0
Oct1 HelaGSE14283 58148257 58148293 36 0
Oct1 HelaGSE14283 58161364 58161399 35 0
P300 T0-glioblastomaGSE21026 57959059 57959273 214 0
P300 T30-glioblastomaGSE21026 57959058 57959503 445 0
Rb GrowingGSE19898 58124517 58124698 181 0
Stat6 IL-4-hr4GSE17850 58107382 58107925 543 0
hScc1 CdLSGSE12603 58144802 58145094 292 0
hScc1 CdLSGSE12603 58181799 58182267 468 0
hScc1 G2GSE9613 58181694 58182464 770 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
20995 mRNA RAB3C chr5 57914695 58183162 4694 EST chr5 58178468 58194955 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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