Annotation Detail for TLCD1

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Basic Information Top

Gene Symbol:	TLCD1 ( - )
Gene Full Name:	TLC domain containing 1
Band:	17q11.2
Quick Links	Entrez ID:116238; OMIM: NA; Uniprot ID:TLCD1_HUMAN; ENSEMBL ID: ENSG00000160606; HGNC ID: 25177
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:1 results

No data

Location(AA)	Modification	Resource
173	Phosphotyrosine(Jak)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_138463
Location:chr17 24075502-24077352
strand:-

Upstream the gene:19 results
Downstream the gene:0 results
Inside the gene:7 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	24078034	24078298	264	814
CTCF	CD4	SISSRdata	24078034	24078298	264	814
CTCF	G2	GSE9613	24076428	24078367	1939	45
H3ac	HepG2	E	24078493	24078725	232	1257
KLF4	hES	GSE17917	24077323	24077595	272	107
NFkBII	GM10847	GSE19485	24075675	24080727	5052	849
NFkBII	GM12892	GSE19485	24075400	24080792	5392	744
Rb	Growing	GSE19898	24077676	24077858	182	415
Rb	Growing	GSE19898	24078120	24078440	320	928
Rb	Quiescent	GSE19898	24077631	24078623	992	775
Rb	Senescent	GSE19898	24077563	24078479	916	669
Rb	shRbSenescence	GSE19898	24078076	24078202	126	787
Rb	shRbSenescence	GSE19898	24078419	24078635	216	1175
hScc1	Bcell	GSE12603	24077298	24078689	1391	641
hScc1	CdLS	GSE12603	24077265	24078648	1383	604
p130	Quiescent	GSE19898	24077659	24077811	152	383
p130	Quiescent	GSE19898	24078535	24078752	217	1291
p130	Senescent	GSE19898	24077517	24078377	860	595
p130	shRbSenescent	GSE19898	24077549	24078484	935	664

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
H3ac	HepG2	E	24075763	24076839	1076	0
RARG	MCF7	GSE15244	24075763	24076631	868	0
Rb	Senescent	GSE19898	24076932	24077418	486	0
VDR	GM10861-Unstim	GSE22484	24073668	24080801	7133	0
VDR	GM10861-stim	GSE22484	24070355	24080715	10360	0
p130	Senescent	GSE19898	24076539	24076855	316	0
p130	shRbSenescent	GSE19898	24076326	24076508	182	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
10860	EST		chr17	24077068	24086117	80	mRNA	LOC116238	chr17	24075502	24077353	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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