Annotation Detail for LYPD1
Basic Information Top
| Gene Symbol: | LYPD1 ( FLJ41033,LYPDC1,MGC29643,PHTS ) |
|---|---|
| Gene Full Name: | LY6/PLAUR domain containing 1 |
| Band: | 2q21.2 |
| Quick Links | Entrez ID:116372; OMIM: 610450; Uniprot ID:LYPD1_HUMAN; ENSEMBL ID: ENSG00000150551; HGNC ID: 28431 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 45 | N-linked (GlcNAc...) (Potential). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 45 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 117 | GPI-anchor amidated serine (Potential). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 45 | N-linked | HMM predict |
| 49 | N-linked | HMM predict |
| 73 | Phosphoserine(IKK) | HMM predict |
| 89 | Phosphoserine(CDC2) | HMM predict |
| 97 | S-palmitoyl | HMM predict |
| 99 | Phosphoserine(IKK) | HMM predict |
| 116 | Phosphoserine(PKA) | HMM predict |
| 116 | Phosphoserine(CK2) | HMM predict |
| 127 | Threonine | HMM predict |
- RefSeq ID: NM_001077427
- Location:chr2 133118895-133145467
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Nanog | hES | GSE18292 | 133145470 | 133145883 | 413 | 209 |
| Rb | Quiescent | GSE19898 | 133164782 | 133164914 | 132 | 19381 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3K27me3 | colorectal | cancer | 133145033 | 133145543 | 510 | 0 |
| hScc1 | G2 | GSE9613 | 133144004 | 133145299 | 1295 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15044 | mRNA | chr2 | 133195745 | 133237859 | 1180 | mRNA | LYPDC1 | chr2 | 133236157 | 133261510 | Sense/Antisense (SA) pairs | |