AutismKB 2.0

Annotation Detail for GRIN3A


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:GRIN3A ( FLJ45414,NMDAR-L,NR3A )
Gene Full Name: glutamate receptor, ionotropic, N-methyl-D-aspartate 3A
Band: 9q31.1
Quick LinksEntrez ID:116443; OMIM: 606650; Uniprot ID:NMD3A_HUMAN; ENSEMBL ID: ENSG00000198785; HGNC ID: 16767
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
145N-linked (GlcNAc...) (Potential).
264N-linked (GlcNAc...) (Potential).
275N-linked (GlcNAc...) (Potential).
285N-linked (GlcNAc...) (Potential).
296N-linked (GlcNAc...) (Potential).
426N-linked (GlcNAc...) (Potential).
439N-linked (GlcNAc...) (Potential).
549N-linked (GlcNAc...) (Potential).
565N-linked (GlcNAc...) (Potential).
886N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
145N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
264N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
275N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
285N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
296N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
426N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
439N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
549N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
565N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
886N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
30O-linkedHMM predict
31O-linkedHMM predict
32O-linkedHMM predict
33O-linkedHMM predict
66Phosphoserine(PKG)HMM predict
85Phosphothreonine(PKC)HMM predict
88Phosphoserine(CDC2)HMM predict
88PhosphoserineHMM predict
88O-linkedHMM predict
92Phosphoserine(CDC2)HMM predict
92Phosphoserine(CDK)HMM predict
92PhosphoserineHMM predict
168Phosphoserine(CDC2)HMM predict
202Phosphoserine(ATM)HMM predict
245Phosphoserine(CK1)HMM predict
245Phosphoserine(IKK)HMM predict
247Phosphoserine(CK2)HMM predict
247Phosphoserine(CK1)HMM predict
264N-linkedHMM predict
275N-linkedHMM predict
285N-linkedHMM predict
286N-linkedHMM predict
296N-linkedHMM predict
300N-linkedHMM predict
320N-linkedHMM predict
426N-linkedHMM predict
439N-linkedHMM predict
483Phosphoserine(CAMK2)HMM predict
549N-linkedHMM predict
552Phosphoserine(CK2)HMM predict
559Phosphoserine(CK1)HMM predict
563Phosphoserine(IKK)HMM predict
563Phosphoserine(CK1)HMM predict
565N-linkedHMM predict
598Phosphotyrosine(INSR)HMM predict
709N-linkedHMM predict
774Phosphotyrosine(EGFR)HMM predict
774PhosphotyrosineHMM predict
774Phosphotyrosine(SRC)HMM predict
774Phosphotyrosine(INSR)HMM predict
774Phosphotyrosine(Syk)HMM predict
796Phosphothreonine(PKC)HMM predict
800Phosphoserine(PKG)HMM predict
800Phosphoserine(CK2)HMM predict
816Phosphotyrosine(INSR)HMM predict
825Phosphothreonine(CDC2)HMM predict
881Phosphoserine(CDC2)HMM predict
892Phosphoserine(ATM)HMM predict
965N-linkedHMM predict
984N-linkedHMM predict
1015N-linkedHMM predict
1018N-linkedHMM predict
1106Phosphotyrosine(EGFR)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_133445
  • Location:chr9 103371455-103540682
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K27me3 colorectalcancer 103541235 103543344 2109 1607
Oct1 H2O2-HelaGSE14283 103554535 103554575 40 13873
Oct1 HelaGSE14283 103554536 103554583 47 13877
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 103369420 103369663 243 1914
CTCF CD4SISSRdata 103369420 103369663 243 1914
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 103513561 103513737 176 0
CTCF CD4SISSRdata 103513561 103513737 176 0
ER Fulvestrant-MCF7GSE14664 103473528 103473563 35 0
NRSF JurkatGSE13047 103538773 103539566 793 0
NRSF mAbJurkat 103429860 103430379 519 0
NRSF mAbJurkat 103537684 103539716 2032 0
NRSF-mono JurkatQuESTdata 103430342 103430539 197 0
NRSF-mono JurkatQuESTdata 103538772 103539496 724 0
NRSF-poly JurkatQuESTdata 103430278 103430546 268 0
NRSF-poly JurkatQuESTdata 103538804 103539428 624 0
Nanog hESGSE18292 103470607 103470893 286 0
Oct1 H2O2-HelaGSE14283 103381842 103381881 39 0
Oct1 HelaGSE14283 103381840 103381879 39 0
Oct1 HelaGSE14283 103465929 103465959 30 0
Oct1 HelaGSE14283 103473533 103473564 31 0
Rb GrowingGSE19898 103404413 103404624 211 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
26837 EST chr9 101436871 101437910 1039 mRNA GRIN3A chr9 101411189 101580417 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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