AutismKB 2.0

Annotation Detail for C10orf90


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Basic Information Top
Gene Symbol:C10orf90 ( FLJ32938,bA422P15.2 )
Gene Full Name: chromosome 10 open reading frame 90
Band: 10q26.2
Quick LinksEntrez ID:118611; OMIM: NA; Uniprot ID:CJ090_HUMAN; ENSEMBL ID: ENSG00000154493; HGNC ID: 26563
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
40Phosphothreonine(PKA)HMM predict
61N-linkedHMM predict
66N-linkedHMM predict
90N-linkedHMM predict
95N-linkedHMM predict
201N-linkedHMM predict
235Phosphoserine(ATM)HMM predict
235Phosphoserine(CDC2)HMM predict
265Phosphotyrosine(Syk)HMM predict
295N-linkedHMM predict
347Phosphothreonine(CDK)HMM predict
382Phosphothreonine(PKC)HMM predict
455Phosphoserine(ATM)HMM predict
466Phosphoserine(CK1)HMM predict
534Phosphothreonine(MAPK)HMM predict
534Phosphothreonine(CDC2)HMM predict
538O-linkedHMM predict
543O-linkedHMM predict
543Phosphoserine(CDK)HMM predict
543Phosphoserine(CDC2)HMM predict
552Phosphoserine(CDK)HMM predict
560Phosphoserine(CK1)HMM predict
562Phosphoserine(ATM)HMM predict
565Phosphothreonine(MAPK)HMM predict
569Phosphoserine(PKA)HMM predict
571Phosphothreonine(PKC)HMM predict
644Phosphoserine(PKG)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001004298
  • Location:chr10 128103563-128199999
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
P300 T30-glioblastomaGSE21026 128199643 128200563 920 104
RNAII Tamoxifen-MCF7GSE14664 128208511 128208551 40 8532
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 128100118 128100156 38 3427
Oct1 HelaGSE14283 128100115 128100148 33 3432
STAT1 HeLaGSE12783 128098802 128104371 5569 1977
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 128138308 128139337 1029 0
CTCF CD4GSE12889 128182778 128182929 151 0
CTCF CD4SISSRdata 128182778 128182929 151 0
CTCF JurkatGSE12889 128148819 128148998 179 0
CTCF JurkatGSE12889 128182744 128182902 158 0
ER Breast-CancerGSE22609 128174914 128175975 1061 0
ER E2-MCF7GSE14664 128111147 128111181 34 0
ER E2-MCF7GSE14664 128188598 128188632 34 0
NRSF JurkatSISSRdata 128187194 128187372 178 0
NRSF-mono JurkatQuESTdata 128187145 128187519 374 0
NRSF-poly JurkatQuESTdata 128187185 128187463 278 0
Oct1 H2O2-HelaGSE14283 128128511 128128540 29 0
Oct1 H2O2-HelaGSE14283 128142212 128142254 42 0
Oct1 H2O2-HelaGSE14283 128157913 128157953 40 0
Oct1 HelaGSE14283 128124783 128124809 26 0
Oct1 HelaGSE14283 128142212 128142255 43 0
Oct1 HelaGSE14283 128152511 128152548 37 0
Oct1 HelaGSE14283 128157870 128157956 86 0
Oct1 HelaGSE14283 128179673 128179738 65 0
P300 T30-glioblastomaGSE21026 128111631 128112590 959 0
P300 T30-glioblastomaGSE21026 128138284 128139257 973 0
P300 T30-glioblastomaGSE21026 128179267 128180112 845 0
RARA MCF7GSE15244 128136879 128137754 875 0
RARG MCF7GSE15244 128136351 128137903 1552 0
RARG MCF7GSE15244 128182428 128183337 909 0
SRF HelaGSE8489 128137099 128138955 1856 0
TFAP2C MCF7GSE21234 128111803 128112269 466 0
hScc1 BcellGSE12603 128141730 128142253 523 0
hScc1 BcellGSE12603 128182493 128183239 746 0
hScc1 CdLSGSE12603 128182663 128183096 433 0
hScc1 G2GSE9613 128182428 128183264 836 0
p130 SenescentGSE19898 128138156 128138492 336 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
3829 mRNA chr10 128104488 128139516 213 mRNA C10orf90 chr10 128103565 128200000Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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