AutismKB 2.0

Annotation Detail for CLCNKA


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Basic Information Top
Gene Symbol:CLCNKA ( CLCK1,ClC-K1,MGC61490,hClC-Ka )
Gene Full Name: chloride channel Ka
Band: 1p36.13
Quick LinksEntrez ID:1187; OMIM: 602024; Uniprot ID:CLCKA_HUMAN; ENSEMBL ID: ENSG00000186510; HGNC ID: 2026
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
660Phosphoserine.
Location(AA) Modifications Resource
660Phosphoserine.Swiss-Prot 53.0
660PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
25S-palmitoylHMM predict
111Phosphoserine(ATM)HMM predict
115Phosphothreonine(MAPK)HMM predict
117O-linkedHMM predict
117Phosphoserine(CDC2)HMM predict
186Phosphothreonine(PKA)HMM predict
193N-linkedHMM predict
198N-linkedHMM predict
327Phosphotyrosine(SRC)HMM predict
366Phosphoserine(IKK)HMM predict
373N-linkedHMM predict
375Phosphoserine(ATM)HMM predict
475O-linkedHMM predict
475O-linkedHMM predict
481O-linkedHMM predict
552N-linkedHMM predict
562Phosphothreonine(MAPK)HMM predict
609O-linkedHMM predict
676AlanineHMM predict
679N-linkedHMM predict
679AsparagineHMM predict
682N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001042704
  • Location:chr1 16221072-16233130
  • strand:+
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
TFAP2C MCF7GSE21234 16237432 16237926 494 4549
hScc1 BcellGSE12603 16233906 16234510 604 1078
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 16231982 16232226 244 0
CTCF CD4SISSRdata 16231982 16232226 244 0
CTCF HelaGSE12889 16232015 16232261 246 0
CTCF G2GSE9613 16221583 16221996 413 0
CTCF G2GSE9613 16231702 16232355 653 0
Fos K562GSE19551 16231862 16232375 513 0
Myc K562GSE19551 16231777 16232320 543 0
STAT1 IFNSISSRdata 16231926 16232413 487 0
hScc1 BcellGSE12603 16221645 16222643 998 0
hScc1 BcellGSE12603 16227336 16227667 331 0
hScc1 BcellGSE12603 16227916 16229003 1087 0
hScc1 BcellGSE12603 16231731 16232355 624 0
hScc1 BcellGSE12603 16232648 16233359 711 0
hScc1 CdLSGSE12603 16231814 16232442 628 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018