Annotation Detail for CLN3
Basic Information Top
| Gene Symbol: | CLN3 ( BTS,JNCL,MGC102840 ) |
|---|---|
| Gene Full Name: | ceroid-lipofuscinosis, neuronal 3 |
| Band: | 16p12.1 |
| Quick Links | Entrez ID:1201; OMIM: 607042; Uniprot ID:CLN3_HUMAN; ENSEMBL ID: ENSG00000188603; HGNC ID: 2074 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 12 | Phosphoserine. | |
| 14 | Phosphoserine. | |
| 71 | N-linked (GlcNAc...) (Potential). | |
| 85 | N-linked (GlcNAc...) (Potential). | |
| 310 | N-linked (GlcNAc...) (Potential). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 12 | Phosphoserine. | Swiss-Prot 53.0 |
| 12 | Phosphoserine | Phospho.ELM 6.0 |
| 14 | Phosphoserine. | Swiss-Prot 53.0 |
| 14 | Phosphoserine | Phospho.ELM 6.0 |
| 71 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 85 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 310 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 12 | Phosphoserine(PKA) | HMM predict |
| 12 | Phosphoserine(PKG) | HMM predict |
| 12 | Phosphoserine(PKB) | HMM predict |
| 14 | Phosphoserine(CK2) | HMM predict |
| 68 | Phosphothreonine(PKA) | HMM predict |
| 71 | N-linked | HMM predict |
| 80 | Phosphothreonine(MAPK) | HMM predict |
| 80 | Phosphothreonine(CDC2) | HMM predict |
| 85 | N-linked | HMM predict |
| 125 | Phosphoserine(MAPK) | HMM predict |
| 151 | Phosphoserine(IKK) | HMM predict |
| 208 | Phosphoserine(ATM) | HMM predict |
| 233 | Phosphoserine(MAPK) | HMM predict |
| 261 | Phosphoserine(IKK) | HMM predict |
| 265 | Phosphoserine(IKK) | HMM predict |
| 340 | S-palmitoyl | HMM predict |
- RefSeq ID: NM_000086
- Location:chr16 28396101-28410903
- strand:-
| No data |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 28410284 | 28410430 | 146 | 0 |
| CTCF | CD4 | SISSRdata | 28410284 | 28410430 | 146 | 0 |
| HIF1 | Norm | HepG2 | 28410490 | 28411284 | 794 | 0 |
| Myc | K562 | GSE19551 | 28410108 | 28411392 | 1284 | 0 |
| NFkBII | GM12878 | GSE19485 | 28407113 | 28408119 | 1006 | 0 |
| P300 | T30-glioblastoma | GSE21026 | 28409780 | 28411655 | 1875 | 0 |
| TFAP2C | MCF7 | GSE21234 | 28409837 | 28410553 | 716 | 0 |
| USF1 | HepG2 | E | 28410151 | 28411427 | 1276 | 0 |
| USF2 | HepG2 | E | 28410151 | 28411427 | 1276 | 0 |
| hScc1 | CdLS | GSE12603 | 28410151 | 28410809 | 658 | 0 |
| p130 | shRbQuiescent | GSE19898 | 28410306 | 28411302 | 996 | 0 |
Validated miRNA targets