Annotation Detail for CCDC38
Basic Information Top
| Gene Symbol: | CCDC38 ( FLJ40089 ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 38 |
| Band: | 12q23.1 |
| Quick Links | Entrez ID:120935; OMIM: NA; Uniprot ID:CCD38_HUMAN; ENSEMBL ID: ENSG00000165972; HGNC ID: 26843 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 70 | Phosphoserine(IKK) | HMM predict |
| 73 | Phosphoserine(ATM) | HMM predict |
| 284 | Phosphoserine(ATM) | HMM predict |
| 289 | Phosphoserine(ATM) | HMM predict |
| 300 | Phosphothreonine(CDK) | HMM predict |
| 300 | Phosphothreonine(MAPK) | HMM predict |
| 300 | Phosphothreonine(CDC2) | HMM predict |
| 317 | Phosphoserine | HMM predict |
| 353 | N-linked | HMM predict |
| 360 | Phosphoserine(ATM) | HMM predict |
| 549 | N-linked | HMM predict |
| 555 | Phosphoserine(CK2) | HMM predict |
- RefSeq ID: NM_182496
- Location:chr12 94784957-94860558
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 94860268 | 94861343 | 1075 | 247 |
| PHF8 | 293T | GSE20725 | 94860121 | 94861632 | 1511 | 318 |
| hScc1 | G2 | GSE9613 | 94860309 | 94861090 | 781 | 141 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 94836468 | 94836750 | 282 | 0 |
| CTCF | CD4 | SISSRdata | 94836468 | 94836750 | 282 | 0 |
| CTCF | G2 | GSE9613 | 94836297 | 94836979 | 682 | 0 |
| ER | MCF7 | GSE19013 | 94803018 | 94803439 | 421 | 0 |
| FOXA1 | MCF7 | GSE15244 | 94808206 | 94808424 | 218 | 0 |
| Myc | K562 | GSE19551 | 94836478 | 94836753 | 275 | 0 |
| RARA | MCF7 | GSE15244 | 94808206 | 94808424 | 218 | 0 |
| hScc1 | Bcell | GSE12603 | 94836339 | 94836952 | 613 | 0 |
| hScc1 | CdLS | GSE12603 | 94836260 | 94836952 | 692 | 0 |
| hScc1 | G2 | GSE9613 | 94836225 | 94836979 | 754 | 0 |
| p130 | Senescent | GSE19898 | 94840215 | 94840395 | 180 | 0 |
| p63 | ME180 | GSE6132 | 94798914 | 94799073 | 159 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6458 | EST | chr12 | 94757412 | 94776239 | 108 | mRNA | FLJ40089 | chr12 | 94763294 | 94838896 | Sense/Antisense (SA) pairs | |