Annotation Detail for CCR7

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Basic Information Top

Gene Symbol:	CCR7 ( BLR2,CD197,CDw197,CMKBR7,EBI1 )
Gene Full Name:	chemokine (C-C motif) receptor 7
Band:	17q21.2
Quick Links	Entrez ID:1236; OMIM: 600242; Uniprot ID:CCR7_HUMAN; ENSEMBL ID: ENSG00000126353; HGNC ID: 1608
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
36	N-linked (GlcNAc...) (Potential).
151	Phosphoserine.

Location(AA)	Modifications	Resource
36	N-linked (GlcNAc...) (Potential).	Swiss-Prot 53.0

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ER	MCF7	GSE19013	35985718	35986605	887	10912
ER	MCF7	GSE10800	35986151	35986816	665	11234
NFkBII	GM12878	GSE19485	35986814	35988356	1542	12336
Rb	Growing	GSE19898	35991594	35991747	153	16421
Rb	Growing	GSE19898	35992042	35992191	149	16867
TFAP2C	MCF7	GSE21234	35991993	35992592	599	17043
p63	keratinocytes	GSE17611	35991719	35992757	1038	16989

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CBP	T30-glioblastoma	GSE21026	35952211	35953158	947	10865
ER	MCF7	GSE19013	35944252	35944926	674	18961
ER	MCF7	GSE19013	35962145	35962691	546	1132
FoxA1	MCF7	MACSdata	35959082	35959428	346	4295
FoxA1	MCF7	MACSdata	35961705	35961964	259	1715
Gata2	K562	GSE18868	35945979	35946642	663	17239
NFkBII	GM12878	GSE19485	35952079	35953489	1410	10766
P300	T30-glioblastoma	GSE21026	35952270	35953425	1155	10702
RARA	MCF7	GSE15244	35950144	35951265	1121	12845
RARA	MCF7	GSE15244	35958616	35959792	1176	4346
RARA	MCF7	GSE15244	35961424	35962086	662	1795
RARG	MCF7	GSE15244	35943524	35943737	213	19919
RARG	MCF7	GSE15244	35950144	35951265	1121	12845
RARG	MCF7	GSE15244	35958269	35959625	1356	4603
RARG	MCF7	GSE15244	35961424	35962301	877	1687
TFAP2C	MCF7	GSE21234	35958637	35959569	932	4447
TFAP2C	MCF7	GSE21234	35961555	35962124	569	1710
p130	Quiescent	GSE19898	35946025	35946255	230	17410
p130	Quiescent	GSE19898	35952382	35953173	791	10772
p130	Quiescent	GSE19898	35959251	35959431	180	4209
p130	Senescent	GSE19898	35952314	35953011	697	10887
p130	shRbSenescent	GSE19898	35946735	35946886	151	16739
p63	keratinocytes	GSE17611	35956901	35957910	1009	6144

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	CD4	GSE12889	35970097	35970370	273
CTCF	CD4	SISSRdata	35970097	35970370	273
CTCF	Hela	GSE12889	35970067	35970352	285
CTCF	G2	GSE9613	35969918	35970459	541
ER	MCF7	GSE19013	35965029	35965689	660
NFkBII	GM12878	GSE19485	35969262	35976677	7415
NFkBII	GM12892	GSE19485	35969470	35972590	3120
Pol2	GM12878	GSE19551	35969772	35975671	5899
RARA	MCF7	GSE15244	35964751	35965651	900
RARG	MCF7	GSE15244	35964751	35965651	900
TFAP2C	MCF7	GSE21234	35965293	35965846	553
VDR	GM10861-Unstim	GSE22484	35956770	35976462	19692
hScc1	Bcell	GSE12603	35969855	35970890	1035
hScc1	Bcell	GSE12603	35972161	35973928	1767
hScc1	CdLS	GSE12603	35969883	35970890	1007
hScc1	G2	GSE9613	35969855	35970395	540

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-125a-5p	hsa-mir-125a	19	19819280
hsa-miR-146a	hsa-mir-146a	5	19819280
hsa-miR-146a*	hsa-mir-146a	5	19819280
hsa-miR-155	hsa-mir-155	21	20078880
hsa-miR-155	hsa-mir-155	21	19819280
hsa-miR-155*	hsa-mir-155	21	20078880
hsa-miR-155*	hsa-mir-155	21	19819280
hsa-miR-29a	hsa-mir-29a	7	19819280
hsa-miR-29a*	hsa-mir-29a	7	19819280

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
11096	EST		chr17	35968892	35969571	679	mRNA	CCR7	chr17	35963549	35975250	Non-exonic Bidirectional (NOB) pairs

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018