AutismKB 2.0

Annotation Detail for SNX20


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:SNX20 ( MGC35578,SLIC1 )
Gene Full Name: sorting nexin 20
Band: 16q12.1
Quick LinksEntrez ID:124460; OMIM: 613281; Uniprot ID:SNX20_HUMAN; ENSEMBL ID: ENSG00000167208; HGNC ID: 30390
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_182854
  • Location:chr16 49264386-49272666
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
NFkBII GM10847GSE19485 49274976 49277271 2295 3457
NFkBII GM12878GSE19485 49272109 49273972 1863 374
NFkBII GM12878GSE19485 49274526 49277671 3145 3432
NFkBII GM15510GSE19485 49274908 49277409 2501 3492
hScc1 BcellGSE12603 49272551 49273178 627 198
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 49256842 49257105 263 7413
CTCF CD4SISSRdata 49256842 49257105 263 7413
CTCF G2GSE9613 49256738 49257013 275 7511
CTCF G2GSE9613 49259324 49259610 286 4920
CTCF G2GSE9613 49263200 49263667 467 953
Myc K562GSE19551 49256861 49257105 244 7404
Oct1 HelaGSE14283 49262400 49262429 29 1972
Oct1 HelaGSE14283 49264043 49264078 35 326
hScc1 BcellGSE12603 49256690 49257013 323 7535
hScc1 BcellGSE12603 49263200 49263667 467 953
hScc1 CdLSGSE12603 49256302 49257013 711 7729
hScc1 CdLSGSE12603 49263238 49263561 323 987
hScc1 G2GSE9613 49256789 49257013 224 7486
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 49268852 49269124 272 0
CTCF CD4SISSRdata 49268852 49269124 272 0
CTCF JurkatGSE12889 49269011 49269143 132 0
CTCF G2GSE9613 49268708 49269121 413 0
TFAP2C MCF7GSE21234 49268137 49268529 392 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
9977 HTC chr16 49257622 49262990 1598 mRNA SLIC1 chr16 49257970 49272714Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved