AutismKB 2.0

Annotation Detail for TTC39C


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Basic Information Top
Gene Symbol:TTC39C ( C18orf17,FLJ33761,FLJ90394,HsT2697 )
Gene Full Name: tetratricopeptide repeat domain 39C
Band: 18q11.2
Quick LinksEntrez ID:125488; OMIM: NA; Uniprot ID:TT39C_HUMAN; ENSEMBL ID: ENSG00000168234; HGNC ID: 26595
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
416N6-acetyllysine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_153211
  • Location:chr18 19826734-19966988
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 19816406 19816644 238 10210
Rb GrowingGSE19898 19816674 19816842 168 9977
STAT1 HeLaGSE12783 19826072 19827310 1238 44
STAT1 IFNSISSRdata 19816137 19816976 839 10178
hScc1 BcellGSE12603 19815441 19815830 389 11099
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 19968366 19968395 29 1392
Oct1 H2O2-HelaGSE14283 19969767 19969793 26 2792
Oct1 HelaGSE14283 19968363 19968395 32 1391
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 19843677 19843866 189 0
CTCF CD4GSE12889 19910242 19910647 405 0
CTCF CD4GSE12889 19952923 19953308 385 0
CTCF CD4SISSRdata 19843677 19843866 189 0
CTCF CD4SISSRdata 19910242 19910647 405 0
CTCF CD4SISSRdata 19952923 19953308 385 0
CTCF HelaGSE12889 19910360 19910693 333 0
CTCF JurkatGSE12889 19941790 19941878 88 0
CTCF G2GSE9613 19848921 19849374 453 0
CTCF G2GSE9613 19910241 19910601 360 0
CTCF G2GSE9613 19953108 19953318 210 0
ER Fulvestrant-MCF7GSE14664 19936283 19936322 39 0
ER MCF7GSE19013 19885173 19885796 623 0
Fos K562GSE19551 19910182 19910546 364 0
FoxA1 MCF7MACSdata 19855871 19856109 238 0
FoxA1 MCF7MACSdata 19885281 19885393 112 0
FoxA1 MCF7MACSdata 19905780 19906026 246 0
Jun K562GSE19551 19910188 19910540 352 0
Myc K562GSE19551 19952945 19953324 379 0
Oct1 HelaGSE14283 19936289 19936316 27 0
P300 T30-glioblastomaGSE21026 19909866 19910803 937 0
PHF8 Hs68plusFBSGSE20725 19847934 19850176 2242 0
RARA MCF7GSE15244 19884869 19885892 1023 0
STAT1 HeLaGSE12783 19827989 19829166 1177 0
TFAP2C MCF7GSE21234 19832594 19833528 934 0
USF1 HepG2E 19895890 19896693 803 0
USF1 HepG2E 19951708 19952591 883 0
USF1 HepG2E 19952996 19953850 854 0
USF2 HepG2E 19885508 19886162 654 0
USF2 HepG2E 19895890 19896407 517 0
hScc1 BcellGSE12603 19848921 19849409 488 0
hScc1 BcellGSE12603 19910274 19911176 902 0
hScc1 BcellGSE12603 19952930 19953357 427 0
hScc1 CdLSGSE12603 19843335 19843938 603 0
hScc1 CdLSGSE12603 19952930 19953386 456 0
p130 QuiescentGSE19898 19849325 19850057 732 0
p130 SenescentGSE19898 19849569 19850296 727 0
p130 SenescentGSE19898 19910251 19910441 190 0
p130 shRbQuiescentGSE19898 19849316 19850116 800 0
p130 shRbSenescentGSE19898 19849039 19850273 1234 0
p63 keratinocytesGSE17611 19860143 19861608 1465 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
12008 mRNA C18orf17 chr18 19826734 19966989 6352 EST chr18 19828174 19834526 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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