AutismKB 2.0

Annotation Detail for CNGA3


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Basic Information Top
Gene Symbol:CNGA3 ( ACHM2,CCNC1,CCNCa,CCNCalpha,CNCG3,CNG3 )
Gene Full Name: cyclic nucleotide gated channel alpha 3
Band: 2q11.2
Quick LinksEntrez ID:1261; OMIM: 600053; Uniprot ID:CNGA3_HUMAN; ENSEMBL ID: ENSG00000144191; HGNC ID: 2150
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
37Phosphoserine(CK2)HMM predict
37PhosphoserineHMM predict
37Phosphoserine(IKK)HMM predict
37Phosphoserine(CK1)HMM predict
37Phosphoserine(PKG)HMM predict
38Phosphoserine(CK2)HMM predict
38O-linkedHMM predict
39Phosphoserine(CK1)HMM predict
43Phosphoserine(CK1)HMM predict
44Phosphoserine(CK1)HMM predict
44Phosphoserine(IKK)HMM predict
64Phosphoserine(IKK)HMM predict
112Phosphoserine(CK1)HMM predict
112Phosphoserine(ATM)HMM predict
145N-linkedHMM predict
146N-linkedHMM predict
147Phosphothreonine(CK2)HMM predict
153Phosphothreonine(PKC)HMM predict
246Phosphothreonine(PKC)HMM predict
270Phosphotyrosine(EGFR)HMM predict
364O-linkedHMM predict
369Phosphothreonine(MAPK)HMM predict
407N-linkedHMM predict
430Phosphothreonine(PKA)HMM predict
450Phosphothreonine(PKC)HMM predict
508Phosphotyrosine(INSR)HMM predict
652N-linkedHMM predict
663Phosphoserine(IKK)HMM predict
663Phosphoserine(PKG)HMM predict
663Phosphoserine(ATM)HMM predict
667Phosphoserine(ATM)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001298
  • Location:chr2 98352831-98381488
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 98339130 98340484 1354 13025
RNAII Tamoxifen-MCF7GSE14664 98337780 98337860 80 15012
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 98395782 98396059 277 14432
CTCF CD4SISSRdata 98395782 98396059 277 14432
CTCF G2GSE9613 98395710 98396028 318 14381
FOXA1 MCF7GSE15244 98395710 98396028 318 14381
Nanog ESGSE20650 98397202 98397524 322 15875
RARA MCF7GSE15244 98395710 98396028 318 14381
hScc1 BcellGSE12603 98395710 98396028 318 14381
hScc1 CdLSGSE12603 98395710 98396028 318 14381
hScc1 G2GSE9613 98395710 98396028 318 14381
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 98368023 98368315 292 0
CTCF CD4SISSRdata 98368023 98368315 292 0
CTCF G2GSE9613 98363041 98363299 258 0
CTCF G2GSE9613 98367548 98368336 788 0
CTCF G2GSE9613 98370460 98370643 183 0
P300 T0-glioblastomaGSE21026 98361911 98362413 502 0
hScc1 BcellGSE12603 98363041 98363299 258 0
hScc1 BcellGSE12603 98367266 98368336 1070 0
hScc1 CdLSGSE12603 98367584 98368336 752 0
hScc1 G2GSE9613 98367584 98368336 752 0
p130 SenescentGSE19898 98368087 98368245 158 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018