Annotation Detail for HSPB6

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Basic Information Top

Gene Symbol:	HSPB6 ( FLJ32389,Hsp20 )
Gene Full Name:	heat shock protein, alpha-crystallin-related, B6
Band:	19q13.12
Quick Links	Entrez ID:126393; OMIM: 610695; Uniprot ID:HSPB6_HUMAN; ENSEMBL ID: ENSG00000004776; HGNC ID: 26511
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
16	Phosphoserine (By similarity).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Oct1	Hela	GSE14283	40940163	40940191	28	408
p130	Quiescent	GSE19898	40939874	40940287	413	311
p130	Senescent	GSE19898	40939815	40940231	416	254
p130	shRbQuiescent	GSE19898	40939796	40940838	1042	548

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
hScc1	Bcell	GSE12603	40938821	40939057	236
p130	Quiescent	GSE19898	40938907	40939091	184
p130	Senescent	GSE19898	40938741	40939106	365
p130	shRbQuiescent	GSE19898	40938758	40939342	584

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-1	hsa-mir-1-2	18	20959496
hsa-miR-1	hsa-mir-1-1	20	20959496
hsa-miR-133a	hsa-mir-133a-1	18	20959496
hsa-miR-133a	hsa-mir-133a-2	20	20959496
hsa-miR-133b	hsa-mir-133b	6	20959496
hsa-miR-21	hsa-mir-21	17	20959496
hsa-miR-21*	hsa-mir-21	17	20959496
hsa-miR-29a	hsa-mir-29a	7	20959496
hsa-miR-29a*	hsa-mir-29a	7	20959496
hsa-miR-29b	hsa-mir-29b-1	7	20959496
hsa-miR-29b	hsa-mir-29b-2	1	20959496
hsa-miR-29b-1*	hsa-mir-29b-1	7	20959496
hsa-miR-29b-2*	hsa-mir-29b-2	1	20959496
hsa-miR-29c	hsa-mir-29c	1	20959496
hsa-miR-29c*	hsa-mir-29c	1	20959496
hsa-miR-320a	hsa-mir-320a	8	19380620
hsa-miR-320b	hsa-mir-320b-1	1	19380620
hsa-miR-320b	hsa-mir-320b-2	1	19380620
hsa-miR-320c	hsa-mir-320c-1	18	19380620
hsa-miR-320c	hsa-mir-320c-2	18	19380620
hsa-miR-320d	hsa-mir-320d-1	13	19380620
hsa-miR-320d	hsa-mir-320d-2	X	19380620
hsa-miR-92a	hsa-mir-92a-1	13	20959496
hsa-miR-92a	hsa-mir-92a-2	X	20959496

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
13099	EST		chr19	40931404	40937428	119	mRNA	HSPB6	chr19	40937309	40939770	Non-exonic Bidirectional (NOB) pairs

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018