AutismKB 2.0

Annotation Detail for CNTFR


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Basic Information Top
Gene Symbol:CNTFR ( MGC1774 )
Gene Full Name: ciliary neurotrophic factor receptor
Band: 9p13.3
Quick LinksEntrez ID:1271; OMIM: 118946; Uniprot ID:CNTFR_HUMAN; ENSEMBL ID: ENSG00000122756; HGNC ID: 2170
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
60N-linked (GlcNAc...) (Potential).
70N-linked (GlcNAc...) (Potential).
142N-linked (GlcNAc...) (Potential).
190N-linked (GlcNAc...) (Potential).
294WSXWS motif.
Location(AA) Modifications Resource
60N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
70N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
142N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
190N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
342GPI-anchor amidated serine (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
21Phosphotyrosine(Abl)HMM predict
60N-linkedHMM predict
70N-linkedHMM predict
142N-linkedHMM predict
180Phosphoserine(PKG)HMM predict
190N-linkedHMM predict
228Phosphothreonine(MAPK)HMM predict
230O-linkedHMM predict
271Phosphotyrosine(Jak)HMM predict
290C-linkedHMM predict
300Phosphothreonine(MAPK)HMM predict
318O-linkedHMM predict
319O-linkedHMM predict
320O-linkedHMM predict
321O-linkedHMM predict
321Phosphoserine(IKK)HMM predict
321O-linkedHMM predict
321O-linkedHMM predict
322O-linkedHMM predict
323O-linkedHMM predict
324O-linkedHMM predict
324O-linkedHMM predict
325Phosphoserine(IKK)HMM predict
325O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001842
  • Location:chr9 34541430-34579721
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 34581768 34581960 192 2143
CTCF CD4SISSRdata 34581768 34581960 192 2143
CTCF HelaGSE12889 34581756 34581970 214 2142
CTCF JurkatGSE12889 34581687 34581968 281 2106
H3K27me3 colorectalcancer 34582273 34583868 1595 3349
TFAP2C MCF7GSE21234 34582988 34583361 373 3453
hScc1 BcellGSE12603 34581580 34582199 619 2168
p130 shRbSenescentGSE19898 34581743 34581955 212 2128
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 HelaGSE14283 34531631 34531664 33 9783
TFAP2C MCF7GSE21234 34530973 34531229 256 10330
hScc1 BcellGSE12603 34536777 34537274 497 4405
hScc1 BcellGSE12603 34538010 34538287 277 3282
hScc1 CdLSGSE12603 34538045 34538287 242 3265
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K27me3 colorectalcancer 34577247 34579222 1975 0
H3K4me3 colorectalcancer 34579480 34579656 176 0
Oct1 HelaGSE14283 34566745 34566784 39 0
hScc1 BcellGSE12603 34566065 34566346 281 0
hScc1 BcellGSE12603 34579180 34580236 1056 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
26354 HTC BC038740 chr9 34558009 34573072 15063 mRNA CNTFR chr9 34541430 34579722 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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